KEGG   Methanosarcina sp. Kolksee: MSKOL_2483
Entry
MSKOL_2483        CDS       T03821                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mek  Methanosarcina sp. Kolksee
Pathway
mek03030  DNA replication
mek03410  Base excision repair
mek03420  Nucleotide excision repair
mek03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mek00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MSKOL_2483
   03410 Base excision repair
    MSKOL_2483
   03420 Nucleotide excision repair
    MSKOL_2483
   03430 Mismatch repair
    MSKOL_2483
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mek03032]
    MSKOL_2483
   03400 DNA repair and recombination proteins [BR:mek03400]
    MSKOL_2483
Enzymes [BR:mek01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MSKOL_2483
    6.5.1.6  DNA ligase (ATP or NAD+)
     MSKOL_2483
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MSKOL_2483
DNA replication proteins [BR:mek03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MSKOL_2483
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MSKOL_2483
DNA repair and recombination proteins [BR:mek03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MSKOL_2483
   NER (nucleotide excision repair)
    Other NER factors
     MSKOL_2483
   MMR (mismatch excision repair)
    Other MMR factors
     MSKOL_2483
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: AKB48260
UniProt: A0A0E3QGB4
LinkDB
Position
3214872..3216578
AA seq 568 aa
MTSFREFAETCQAIEKISSTIDTTSRVADLLKMVDVEELPIATHFIMSEVFPAWSGEQLG
IGTSLLYVSLSKASGMPVKSIESLIRTTGDIGDTALLILKEKRKNQVTFSSFFEEQPELS
ITEVYNRFKIASEASGKGSQDIKIKNLQFLFNSSTPREAKYISRLALEELRIGVGEGVVR
DAIAKAFSVPAGVVEHAFMVTNDLGIVAATAKEGGVESLEHLGIEINRPIKMMLSQISPD
IIDDIKEMKEAAIEWKFDGARIQVHKDGNSVTLFSRKLENVTNSLPDLVDIVRKHVKAES
AILDGEAVAVDENGKPRAFQEILKRFRRKYDVEEKALGIPIQLNLFDIMYLNGKTLIDLP
LIERRKALESCVESSVEDSKSICVDKQVITGDLELIEKIYKEALEAGHEGVMVKNPNSIY
SPGKRGKNWLKKKPLMETLDLVIVGAEWGFGRRANLIGSYTLACYDPENLHYLQIGKVGT
GLTDDQLKELTEILAGLMEGGEAGGVFAIRPKVVLEIAFEEIQKSPNYDSGFALRFPRFI
RIRDDKDPEEADTIQRIGKVYSQQLKRL
NT seq 1707 nt   +upstreamnt  +downstreamnt
atgacaagtttcagggaatttgcagaaacctgccaggcgattgaaaaaatctcgagtaca
attgatactacaagtagggttgctgaccttcttaaaatggttgatgttgaagagttgccc
attgcaactcattttattatgagtgaggtttttcctgcctggagtggagaacaattggga
attggcacgagcctgctgtatgtttccttatccaaagcttccggaatgccagtaaaaagt
atagaatctcttattcggactaccggggatataggggacacagcccttcttatcctcaag
gagaaaaggaaaaatcaggttactttttcctctttcttcgaagaacagcccgagctctca
ataaccgaagtttataaccgttttaaaattgcctctgaagcctcaggaaaaggctcacag
gacattaagataaagaaccttcagtttctcttcaattcctcgaccccaagggaagcaaag
tatatttccaggcttgcgcttgaggaactccgcataggcgtcggagaaggcgttgtaaga
gatgcaattgcaaaagctttttccgtgcctgcgggtgttgttgagcacgcctttatggtt
acgaacgacctggggatagttgctgcaactgccaaggaaggcggggtggaatcccttgaa
cacctgggaattgaaatcaatcgcccgattaagatgatgctctcgcagatcagccctgac
ataattgacgatatcaaagaaatgaaggaggctgcgattgaatggaaattcgatggggca
agaatccaggtccataaggatggaaattcagttacgcttttctcacgaaagcttgaaaat
gttacaaattctctccctgaccttgtggatatcgtgcgcaagcatgtaaaagccgaatct
gccatccttgacggagaagccgtcgcagtggacgagaatggtaagcccagggcatttcag
gagatccttaaacgcttccggcgcaagtacgatgtggaagaaaaagcccttggcatccct
attcagctcaacctttttgacataatgtacttaaacggaaaaacgctgatagacctgcct
cttattgagcggcgaaaagcgcttgagtcctgcgtggaaagctcggttgaggattcaaaa
tccatctgcgtggacaaacaggtaataacaggagaccttgagcttatagagaaaatctat
aaggaagccttagaagccggacatgagggagttatggtcaaaaacccgaattcgatttat
tcccctggtaaacgcggcaaaaactggcttaagaaaaagcctcttatggaaactcttgac
cttgtaatcgtaggcgccgaatggggctttggaaggcgcgcaaatctcataggctcttac
acacttgcctgttatgacccagaaaatctgcattatcttcagatcgggaaagtaggcacg
ggcctgaccgatgaccagctaaaggagctcacagagatacttgccgggcttatggaaggt
ggagaggcaggtggggtatttgcaatccggccaaaagtagtcctggaaatcgcctttgag
gaaatccagaaaagccccaattatgattccggttttgcgctgcgtttccctcgctttatc
cgcatccgggatgataaagaccccgaagaagccgatacgatacagagaattggaaaggta
tatagccagcagttgaaaaggctgtaa

DBGET integrated database retrieval system