Pulveribacter suum: C7H73_09480
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Entry
C7H73_09480 CDS
T05362
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
melm
Pulveribacter suum
Pathway
melm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
melm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
C7H73_09480 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
melm03400
]
C7H73_09480 (ligD)
Enzymes [BR:
melm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
C7H73_09480 (ligD)
DNA repair and recombination proteins [BR:
melm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
C7H73_09480 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
AVP57866
UniProt:
A0A2P1NLK2
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All DBs
Position
complement(2066785..2069307)
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AA seq
840 aa
AA seq
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MARRKDDPLSSYRQKRDFTVTPEPQEGGAPSHGALRFVVQKHWATRLHYDFRLELDGTMK
SWAVPKGPSYDPADKRMAVPVEDHPISYNTFEGDIPQGQYGGGHVIVWDKGWWEPLEDPE
QGLRSGKLKFVLHGHKLHGRWTLVRMGGGRGKPAWLLIKERDGLERAATDYSVVDALPDS
VGPLPEAPGRPATAPSKPAQSPAAKPSALPDFIAPQLATLVDEPPAPRADWLYELKFDGY
RILARIDGQDIRLLTRAGKDWTQRMPHLVQALARLGLGSAWLDGEIVVPDSQGVPDFQAL
QNAFDATGAADVVYYAFDLPFLDGRDLRNLPLVQRRAALQQALAQADERHVRLSAPFDAP
AAELLASSCALGFEGVIGKRRDAPYVSARSQDWIKLKCSQRQEFVIAGYTDPKGTRTGLG
SLLLGVHDEKSGALRYAGNVGTGFTRQSLQALSARLRALKTDESPFAQRSHIAGSPHWVR
PELMAEVAFAGWTRDARVRHAVFHGLREDKPAAAIVRERSAPLVPPRQRAAPAASGKPAP
AGDDEAQVGTLRITHPDRVIDPTTGATKLDLVRYYARVGPLMMEHLAQRPVSVVRTPGGV
QGVRVFQRHFDTGDLPGLRALDPALYEGHPPLFEVASAEGLAQAAQMSVVELHTWNARRD
RIDRPDRMVFDLDPGEDVAWQQVLEGAELVRVLLQELGLPAFLKTSGGKGLHVVTPIKRL
YDWDTVRAFSQAVVQHLARTLPQRFVAQAGPRNRVGRIFVDWLRNSFGATTVSAWSVRAR
PGLGISVPLRWNELHGLESSAHWHLGNIDARLDEGNAPWRGYAKATVSLTPAMRTLKDGR
NT seq
2523 nt
NT seq
+upstream
nt +downstream
nt
atggcccggcgtaaggacgacccactgtctagctatcggcaaaagcgcgacttcaccgtc
acgcccgagccgcaggagggcggtgcgcccagccatggcgccctgcgcttcgtcgtgcaa
aagcactgggcaacgcggctgcactacgacttccggctggagttggacggcaccatgaag
agctgggccgtgcccaagggccccagctacgacccggcagacaagcgcatggcggtgccg
gtcgaagaccacccgatttcctacaacacgttcgagggcgacatcccccaggggcaatac
ggcggcggccacgtcattgtctgggacaagggctggtgggagcctttggaagatcccgag
caaggactgcgcagcggcaaactcaagttcgtcctgcacggccacaagctgcacggacgc
tggactctggtgcgcatgggcggcgggcgcggcaagcccgcctggctgctgatcaaggag
cgcgacggcttggaacgggccgcgacggattacagcgtggtggatgccctgccagacagc
gttggtccgctgccagaagcgcctgggcggcccgcaacggccccttccaagcccgctcaa
tccccagcggcgaagccgtctgccctgcccgacttcatcgccccgcagctggccacgctg
gtggacgaaccccctgccccgcgcgccgactggctgtacgagctgaaattcgacggctac
cgcatcctggcgcgcatcgacggccaggacatccgcctgctcacgcgcgccggcaaggac
tggacgcagcgcatgccgcacctcgtgcaggcccttgcccgcctgggactggggtcggcc
tggctcgacggtgagatcgtggtgccggacagccagggcgtgccggacttccaggcgctg
caaaacgccttcgatgccacgggcgccgccgacgtcgtgtactacgcgttcgacctgccg
ttcctggacggccgcgatttgcgcaacctgccgctggtgcagcgccgtgcggccctgcag
caggcgctggcgcaggcagacgagcgccacgtgcgcctcagcgcacccttcgacgcgccg
gcagcagagctccttgcctcgtcctgcgccctgggatttgaaggcgtgatcggcaaacgc
cgtgatgcaccctatgtttctgcccggtcgcaggactggatcaagctcaaatgcagccag
cgccaggaattcgtcattgccggctataccgacccgaaaggcacgcgcaccggcctgggc
tcgctgctgctgggtgtgcacgacgagaaaagcggtgcgctgcgctacgccggcaatgtg
ggcacggggttcacccgccagtccctgcaggcgctgtctgcccggctgcgagcgctgaaa
acggacgagtcgccctttgcgcagcgcagccacatcgccggcagcccgcactgggtgcgg
cccgagctgatggccgaggtggcctttgctggctggacacgcgacgctcgcgtgcgccac
gccgtgtttcacggactgcgcgaggacaagccggctgccgccatcgtacgcgagcgctct
gccccgctggtgccgccgcgccagcgcgccgcgccggccgccagcggcaagcctgcgccg
gcgggcgacgacgaggcgcaggtgggcacgttgcgcattacccatcccgaccgcgtcatc
gacccgaccactggcgccaccaagctcgacctggtgcgctactacgcgcgggtggggcct
ttgatgatggagcacctggcacaacgcccggtttcggtggtgcgcacgccgggcggcgtg
caaggcgttcgggtcttccagcgtcacttcgacaccggcgacctgcccggcctgcgcgcg
ctggaccctgcgctctatgaaggccatccgcccttgttcgaggtggcaagcgccgaagga
ctcgcgcaggcggcgcaaatgagcgtggtggagctgcacacctggaacgcccgccgcgac
cgcatcgaccggcctgaccgcatggtcttcgatctggaccctggggaagatgtggcctgg
cagcaggtgctggagggtgccgagctggtgcgtgtgctgctgcaagagctgggcctgcca
gctttcctgaaaaccagcgggggcaagggcctgcacgtggtcacgcccatcaagcggctg
tacgactgggacaccgtgcgcgcgttctcgcaggctgtcgtgcagcacctggcgcgtacg
ctgccgcaacgcttcgtggcccaggccgggccacgcaaccgcgtgggccgcatcttcgtg
gactggctgcgcaacagctttggcgccaccacggtcagcgcctggtcggtacgggcgcgg
cccggcctgggcatctcggtgccgctgcgctggaacgagctgcacggcctggagagcagc
gcgcactggcatctgggcaacatcgacgcgcgcctggacgaaggcaacgcaccctggcgc
ggctacgcgaaggccactgtctccctcacgccggcgatgcggacgctgaaggacgggcgc
tga
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