KEGG   Methanococcoides orientis: J7W08_06895
Entry
J7W08_06895       CDS       T08012                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
melo  Methanococcoides orientis
Pathway
melo03030  DNA replication
melo03410  Base excision repair
melo03420  Nucleotide excision repair
melo03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:melo00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    J7W08_06895
   03410 Base excision repair
    J7W08_06895
   03420 Nucleotide excision repair
    J7W08_06895
   03430 Mismatch repair
    J7W08_06895
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:melo03032]
    J7W08_06895
   03400 DNA repair and recombination proteins [BR:melo03400]
    J7W08_06895
Enzymes [BR:melo01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     J7W08_06895
    6.5.1.6  DNA ligase (ATP or NAD+)
     J7W08_06895
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     J7W08_06895
DNA replication proteins [BR:melo03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    J7W08_06895
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     J7W08_06895
DNA repair and recombination proteins [BR:melo03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     J7W08_06895
   NER (nucleotide excision repair)
    Other NER factors
     J7W08_06895
   MMR (mismatch excision repair)
    Other MMR factors
     J7W08_06895
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase DnaB_C
Other DBs
NCBI-ProteinID: UGV39855
LinkDB
Position
complement(1444874..1446559)
AA seq 561 aa
MTDFKEFADVCKKIEHTAGSLDMTDIVSEMLHSVSGEELPVVVHFVMGDVFPAWSTEQLG
VGPSLLYAALSRSSGLSQKEIENLVRNTGDIGETAIAALKKETKNQATFSAFMDDTPSLS
IMEVFERFNNISRTNGKGSQTTKIKNLQYLFNSATPEEARYLARLAIEDLRIGVGEGIVR
DAISKAFGVPAGDIERGFMLTNDLGLVAIAAKEGGLEAVSKLDMELNRPIKMMLAQVTPS
IETAINDLGVVAVEWKFDGARVQIHKDGDNINIFSRRLENVTGSLPDIVEAVKNNVKADS
AILEGEAVAVDEDGNPRAFQDILKRFRRKYDVETTVREIPLKLNLFDILYLNGEVLIDMS
LSDRRNALVGCVENNGGIMVDEQVLTDDAEKVNEIYSAALAAGHEGVMIKNPKAPYSPGK
RGKNWLKKKPIMETLDLVVIGAEWGYGRRANLIGSYALACFDPDAGTFLPIGKVATGFSD
EQLAELTELLSDQIVVESGREIELKPEVVFEVAFEEIQKSTNYESGYALRFPRLVNVRED
KSPEEAETLERIESIYLAQRS
NT seq 1686 nt   +upstreamnt  +downstreamnt
atgaccgatttcaaagaattcgctgacgtatgtaaaaaaatagaacatactgcaggctca
ctggatatgacggacatcgtctctgagatgttacattcagtatccggtgaagaacttccg
gttgttgttcattttgttatgggggatgtcttccctgcatggagcaccgaacagcttgga
gttggtccgagtcttctttacgcagctctgtccagatcatcaggtctttcgcaaaaagag
atcgagaacctcgtgcgaaataccggggatatcggtgagactgcaattgccgcactgaaa
aaagaaactaagaatcaggcaacgttctctgctttcatggatgatactccatcgctttct
atcatggaagtatttgagaggttcaacaacatttcaaggacaaacggaaaaggttctcag
acaactaagataaagaatttgcagtatcttttcaattcagcaactcctgaggaagcccgc
tatcttgcaaggctggcaatagaagatcttcgaattggtgttggtgaaggtatcgtaagg
gatgcaatctccaaagcattcggagtgcctgcgggggatattgaacgtgggtttatgctg
accaatgatcttggccttgtggcaattgctgcaaaagaaggtggtttggaggcggtttca
aagcttgatatggaactgaaccgaccgatcaagatgatgctggcacaggtcacgccaagt
attgaaactgctatcaatgatcttggtgttgtggctgttgaatggaagttcgatggtgcc
agggtgcagatacacaaggatggggataacatcaacatcttctcaagacgtcttgagaat
gttacaggttcattaccagatatcgttgaagctgtgaagaataatgtaaaggcagattct
gcaattcttgagggtgaggctgttgctgtggatgaggatggaaatcctcgtgcatttcag
gatatccttaagcgcttcaggaggaagtatgatgttgagaccacggtgcgtgagatccct
cttaagctgaacctttttgacattctctaccttaatggtgaagtgctgatcgatatgtca
ctttccgacaggagaaatgctctggtcggatgtgttgaaaacaacggtggtataatggtt
gatgagcaggtgcttactgatgatgccgaaaaagtgaacgagatctactctgcagcactg
gctgcaggtcatgaaggtgtcatgatcaaaaatccaaaagctccctattcacccggcaaa
aggggcaagaactggttaaagaagaaacctatcatggaaactctcgaccttgtggtcatt
ggtgcggaatggggttatggaaggcgtgcaaacctcattggttcctatgcactggcatgc
tttgatcccgatgcaggcactttccttccaataggaaaggtggctaccggtttttcagat
gaacaacttgcagaactgacagagcttctgtccgatcagatcgttgttgaatccggaaga
gagatcgagctaaaaccagaagtagtattcgaggtcgccttcgaggagatccagaagagt
actaattatgaatctggatatgcattgaggttcccaaggcttgtgaatgtcagggaagac
aagtctcctgaagaagccgagacccttgagcgtatcgagagtatttatcttgctcaaagg
agttaa

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