KEGG   Candidatus Methanoliparum sp. LAM-1: MTLP_09610
Entry
MTLP_09610        CDS       T07692                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
melu  Candidatus Methanoliparum sp. LAM-1
Pathway
melu03030  DNA replication
melu03410  Base excision repair
melu03420  Nucleotide excision repair
melu03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:melu00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    MTLP_09610
   03410 Base excision repair
    MTLP_09610
   03420 Nucleotide excision repair
    MTLP_09610
   03430 Mismatch repair
    MTLP_09610
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:melu03032]
    MTLP_09610
   03400 DNA repair and recombination proteins [BR:melu03400]
    MTLP_09610
Enzymes [BR:melu01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     MTLP_09610
    6.5.1.6  DNA ligase (ATP or NAD+)
     MTLP_09610
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     MTLP_09610
DNA replication proteins [BR:melu03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    MTLP_09610
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     MTLP_09610
DNA repair and recombination proteins [BR:melu03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     MTLP_09610
   NER (nucleotide excision repair)
    Other NER factors
     MTLP_09610
   MMR (mismatch excision repair)
    Other MMR factors
     MTLP_09610
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase
Other DBs
NCBI-ProteinID: BDC36279
LinkDB
Position
891493..893265
AA seq 590 aa
MDVLYRELVDTFEKIEKTSKRLEITDYLSNLFKKIPSDIIDKVVYLIKGGLHPDYLGIEL
GIAEKLTIKSISAATSIPEEDILKKWQEIGDLGTVTEILISNQTKEEESKKNSYSIKKPL
TIEAVYMVLGHIAKLSGTGSQKAKIQILSYLLQYAEPVEAKYIIKTVTGKLRLGVGDMLI
IDALSIAFAKKTDRNVIERAYNIYPDLGMIAKVLAKEGLDGVLSIKITPGIPIRPMLAER
LYNIKEILEKIPLSAVENKYDGIRMQCHIKDDIIKLFSRRLEDITDQFPDIRMDLKESKI
RDAIFEGECVAFNQNTGEILPFQEISHRRGRKQGIIQAIEDYPVCLFLFDCLYKDGEDLT
VKSYLERRKILESVIKPFDKIDISNYEIIDNIKDFEKFFDRALEIGCEGIIAKSPDSKYM
AGARGWNWIKYKREYKSELVDTVDLVAVGAFSGRGRRAGTYGALLMAAYNPDKDCFETVC
KLGTGFDDDTLMRLPAKFEEYRLKEIDKSVESRIDADYWFVPSVVMEILGAEITLSPIHT
CGLGSIKDDFGLAIRFPRFTGRWRDDKNPFDATTTPEIIEMYKLQLKRFK
NT seq 1773 nt   +upstreamnt  +downstreamnt
ttggatgtactatatagggaattagtagatacatttgaaaaaatagaaaaaacaagcaaa
cggcttgagattaccgattatctatcaaatctttttaaaaagataccttctgatattatt
gataaagtagtttatctgataaaaggagggcttcatccggattatttgggaatagagctt
ggtattgcagaaaaattaactataaaatcgatctctgctgctacttctattccagaagaa
gatatattaaaaaaatggcaagagataggagatttaggaactgttaccgagattttgata
tcaaatcagacaaaagaggaagagagcaaaaaaaattcttattctataaaaaaaccattg
accatcgaggcagtatacatggttttgggtcatattgccaaattaagcggtacgggctct
caaaaagcaaaaatacagattttatcatatctattacaatatgcagagccagtagaagca
aaatatataataaaaacagttactgggaaactaaggcttggagtaggagatatgttaata
atagatgcattatcgatcgcatttgcaaaaaaaacggatagaaacgtgatagaaagagca
tacaacatatatccagatcttggcatgattgcaaaagtacttgctaaggaaggattggat
ggtgtcttatccataaaaataacaccaggaatacctatcagacctatgcttgcagagcgt
ctttacaatataaaagagatattggaaaaaattccgctatctgccgttgaaaacaaatat
gatgggataagaatgcagtgccatattaaagatgatattataaaattattctcacgacga
ttggaagatataaccgatcagtttccagatataagaatggatttaaaagaatcaaagatt
cgtgatgccatttttgagggagaatgtgtcgctttcaatcaaaataccggagaaattctt
cctttccaagaaatatctcatcgaagagggagaaaacaaggaattatccaagcaattgag
gactatccggtatgtctctttttatttgattgtttatataaagatggtgaagatttaacg
gtaaagagctatcttgaacggagaaaaatacttgaatcagttataaaaccgtttgataag
atcgatatatctaactatgagataattgataatataaaagattttgaaaaattttttgat
agagctctagagattggatgtgaaggtatcattgcaaaatctcccgattccaaatacatg
gcgggagcaagaggatggaactggataaagtataaaagggagtataaatcagagctagta
gatactgttgacttagtggcggtcggcgcctttagtgggagagggcggcgggcgggaacg
tatggtgcgttgctaatggcagcgtataatccggataaagactgtttcgagacggtatgc
aagcttggtacaggattcgatgatgatacattaatgagattacccgccaaatttgaagaa
tatagactcaaggaaatagataaaagcgttgaatcaaggatagatgcagattactggttt
gttccttctgttgtgatggagattcttggtgcagagataactttaagtcctatacatacg
tgcgggcttggatctataaaagatgattttggccttgcgataaggtttccgaggtttacc
ggacgatggagagatgataaaaatcctttcgatgcaacgactacgcctgagataatagag
atgtacaaattacaattaaaaagatttaaataa

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