Microbacterium elymi: L2X98_19140
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Entry
L2X98_19140 CDS
T09210
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mely
Microbacterium elymi
Pathway
mely03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mely00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
L2X98_19140 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mely03400
]
L2X98_19140 (ligD)
Enzymes [BR:
mely01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
L2X98_19140 (ligD)
DNA repair and recombination proteins [BR:
mely03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
L2X98_19140 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
UUT35491
LinkDB
All DBs
Position
251955..253025
Genome browser
AA seq
356 aa
AA seq
DB search
MGDEQLVQIGGRRLRLSRLDKVLYPATGTTKGEVIDYYTRIAPLLLPHITGRPVTRKRWP
EGVDQPPFFAKHLEAGAPEWVHRLPIRHSTGEKDYPLVDDLPTLVYLAQVASLELHVPQW
RFAPDGGRGNPDRLVLDLDPGPGTGLAECAQVAFWARAILADMGLDPHPVTSGSKGIHLY
AGLDQQQTSDQASAVARELARALEADHPDLVVSRMAKELRAGRVLLDWSQNNGSKTTIAP
YSLRGRAHPTVAAPRTWEELAAPGLAQLEIAEVLERADRIGDPMGALGFRAGGRAAASGP
LSAYIAKRDPSRTPEPVPGNPLAAPTPAGSRLDSSSRSIMPGDCIGICGSSTTACS
NT seq
1071 nt
NT seq
+upstream
nt +downstream
nt
atgggcgacgaacagctggtgcagatcggcggccgccgcctgcgcctgagccgtctcgac
aaggtgctctatccggccaccggcaccaccaagggcgaggtgatcgactactacacgcgg
atcgcgcccctgctgctgccgcacatcaccgggcgtccggtgacgcgcaagcggtggccg
gagggcgtcgaccagccgccgttcttcgccaagcacctggaggcgggagcgccggagtgg
gtgcaccggctgccgatccgccactcgaccggcgagaaggactatccgctcgtcgacgac
ctgcccacgctggtctacctcgcgcaggtcgcgagcctcgagctgcacgtgccgcagtgg
cggttcgccccggacggcggacgcggcaatccggaccgcctggtcctcgacctcgacccc
ggaccgggcacgggcctggccgaatgcgcgcaggtcgcattctgggcgcgcgccatcctg
gccgacatggggctcgacccgcatccggtcaccagcggcagcaaggggatccacctgtac
gccggactggaccagcagcagaccagcgaccaggcctccgccgtggcccgcgagctcgcc
cgcgcgctggaggccgatcaccccgacctggtggtcagccggatggccaaggagctgcgc
gccgggcgcgtgctcctggactggagccagaacaacggcagcaagacgacgatcgccccg
tactcgctgcgcggacgggcgcaccccaccgtcgccgcaccgcgcacctgggaggagctg
gccgcccccggactcgcccagctcgagatcgccgaggtgctcgagcgcgccgaccggatc
ggcgacccgatgggtgcgctcgggttccgcgccggcggccgggccgcggcatccggcccg
ctgtcggcctacatcgccaaacgcgacccgtcccgcacccccgagccggtgcccggcaac
ccgctggccgcacccacgccggcgggcagccgcctcgattcgtcatccaggagcatcatg
cccggcgactgcattgggatctgcggctcgagcacgacggcgtgttcgtga
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