Methanobacterium alkalithermotolerans: HYG87_00370
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Entry
HYG87_00370 CDS
T07794
Name
(GenBank) DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
meme
Methanobacterium alkalithermotolerans
Pathway
meme03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
meme00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HYG87_00370
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meme03400
]
HYG87_00370
Enzymes [BR:
meme01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HYG87_00370
DNA repair and recombination proteins [BR:
meme03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HYG87_00370
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
RNA_ligase
DNA_ligase_A_C
DNA_ligase_OB_2
WG_beta_rep
Motif
Other DBs
NCBI-ProteinID:
QUH22327
UniProt:
A0A8T8K2Z1
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All DBs
Position
complement(66424..67311)
Genome browser
AA seq
295 aa
AA seq
DB search
MIEPMLATLVKEKLQLEGKWVIEPKYDGERIIAQRNKDKIDLWTRRHVNAAYKFPEIVEA
LRRNINSDNWILDGELTVEGGFRQLLKRNVEDKFKIGILSWKMPATYNLFDILHLDGEDL
TNKTLLERKGILLKAVYFKEGIDIVPFQEAGDSNWKNRFKEYLDEGFEGVVLKKAHSTYE
AGKRSDKWLKVKKQDTVDVYVVGATRSTGSIPFGALILKKDGKFLGKVGTGFSDRDREII
LHILKKNQAPLDIELPPEVESELLISTRPLLAEIRVQEMINGSPRAPVWVRFRWD
NT seq
888 nt
NT seq
+upstream
nt +downstream
nt
atgattgaacccatgctggctactttagttaaagaaaagctccaattggagggtaaatgg
gttattgaacctaaatatgatggagagcgaataattgcccagcgaaataaagataagatt
gatctctggacccgtagacatgttaatgctgcatataagtttccagagattgtagaagct
ttaagaagaaatattaacagtgataattggatcctggatggggagcttacggtggagggt
gggtttagacaattattaaagcgtaatgtggaggataaatttaaaataggtattttatcc
tggaagatgcccgccacctataacctgtttgatattttacacctggatggggaagattta
accaataaaacattgctggaacgaaaaggcattttattaaaagcggtttattttaaggag
ggtattgatattgttccctttcaggaggccggggatagtaactggaaaaatcgttttaag
gaatacctggatgagggctttgaaggcgtggttcttaaaaaagcacattcgacctatgaa
gctggtaaaagatcagataaatggttaaaagttaaaaaacaggacacggtagatgtatat
gtggtgggtgctacccgtagcacaggtagtattccttttggtgctttaatccttaaaaaa
gatgggaaatttttgggtaaggtaggtaccggttttagtgatagggatcgtgaaatcata
ctccatatacttaaaaaaaatcaggcccctctggatattgagctacctcctgaggtggaa
tctgaattattaattagtacccgcccccttttagctgaaatacgagtccaggaaatgata
aatggatctccccgggctccggtatgggtgcgtttccgctgggattaa
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