Methanobacterium alkalithermotolerans: HYG87_04590
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Entry
HYG87_04590 CDS
T07794
Name
(GenBank) RNase J family beta-CASP ribonuclease
KO
K12574
ribonuclease J [EC:3.1.-.-]
Organism
meme
Methanobacterium alkalithermotolerans
Pathway
meme03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
meme00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
HYG87_04590
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
meme03019
]
HYG87_04590
Messenger RNA biogenesis [BR:
meme03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
HYG87_04590
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GFIT
Motif
Pfam:
RMMBL
Lactamase_B
Lactamase_B_2
Motif
Other DBs
NCBI-ProteinID:
QUH23098
UniProt:
A0A8T8K3M4
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Position
complement(949339..950691)
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AA seq
450 aa
AA seq
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MSTEIIAIGGYEEVGKNMSAVKVGKDIVIFDMGIHLDRLHIHEDTYIEKMHSLDLIERGV
IPDDTLMKDVDGKVKAIVFTHGHLDHIGAVAKLAHRYDAPLIATPYTMALIERTIKGERK
FKFDNPLQVLNSGEKCQISPEITLEFVHTTHSIPQTVTPVLHTSEGVIVYSNDFKFDNHQ
TISPPPDYQRFRELGEKGVLAAIIDATRAAEPDQVKTHSEKIARIVLEDIMEQPLKEDDG
IIITTFASHIERIQAICNIASKSNRQLLLLGRSMERYCSLAENMGLLKIPENASVYGSPK
AINRALARANEKRSDFVLVTTGHQGEPDALLPRIANDKTLFEVQKGDNIIISAPIIPNPL
NKANRNLMERRLKGKGARIFTNAHVSGHAGREDHRDFLRMLQPQHLIPSHGNLGMLTAYA
ELAEEEGYRLGHNIHLLRNGQAQVFNKEKK
NT seq
1353 nt
NT seq
+upstream
nt +downstream
nt
atgagtactgaaataatagccatcggaggatatgaagaggtaggaaaaaacatgtccgca
gtgaaggtgggaaaggatattgtaatatttgatatgggaatccatctggaccggcttcat
attcatgaagatacctatatagagaaaatgcatagtctggatttaattgaaagaggggtc
ataccggacgataccctcatgaaagatgtagacggcaaggttaaagccattgtatttacc
catgggcacctggatcacattggggcagtggctaaactggcccatagatatgatgctcct
ttaatagccactccttacaccatggccttaatagaaagaaccattaaaggagagcggaaa
tttaaatttgataacccccttcaggtattgaattctggcgagaaatgtcagatttctccc
gaaataactctggaatttgtgcacaccacccacagtatacctcaaacggttactccggtc
ctgcatacctcagaaggagtaattgtatattctaatgatttcaagtttgataaccatcag
accatttccccaccaccagactaccagcggttcagggaactgggagaaaagggtgtacta
gcagcaataatcgacgctacccgtgctgcagagcctgaccaggttaaaactcattctgaa
aaaatagcccgtatagttttagaggacatcatggaacaacccttaaaagaagatgatgga
ataataatcaccaccttcgcctctcatattgaaaggattcaggctatctgtaatatagct
tctaaaagcaacagacagctcctgcttttaggaagatccatggagagatactgcagcctg
gctgaaaacatgggattacttaaaataccagaaaatgccagtgtttatggtagtcccaag
gccattaaccgggctctagccagggcgaacgaaaaaagatcagattttgttctggtaacc
accggacaccagggtgaaccagatgcacttttacctcgaattgcaaatgataaaactctt
tttgaagtacaaaaaggagataacattattatatctgcaccaataattcccaatcctctc
aataaagccaaccgtaaccttatggagcgtagattgaaaggcaagggtgctcgcatattc
accaatgctcatgtatctggccatgcaggaagggaagatcaccgggacttcttaagaatg
ctacaaccccaacacctgataccttctcatgggaacctgggaatgttgactgcttatgct
gaactggcagaagaagagggctacagattaggtcacaacatccatctattacgtaatggc
caggcccaggtttttaataaagaaaaaaaataa
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