KEGG   Methanoplanus endosymbiosus: L6E24_09630
Entry
L6E24_09630       CDS       T08358                                 
Name
(GenBank) ATP-dependent DNA ligase
  KO
K10747  DNA ligase 1 [EC:6.5.1.1 6.5.1.6 6.5.1.7]
Organism
mend  Methanoplanus endosymbiosus
Pathway
mend03030  DNA replication
mend03410  Base excision repair
mend03420  Nucleotide excision repair
mend03430  Mismatch repair
Brite
KEGG Orthology (KO) [BR:mend00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03030 DNA replication
    L6E24_09630
   03410 Base excision repair
    L6E24_09630
   03420 Nucleotide excision repair
    L6E24_09630
   03430 Mismatch repair
    L6E24_09630
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03032 DNA replication proteins [BR:mend03032]
    L6E24_09630
   03400 DNA repair and recombination proteins [BR:mend03400]
    L6E24_09630
Enzymes [BR:mend01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     L6E24_09630
    6.5.1.6  DNA ligase (ATP or NAD+)
     L6E24_09630
    6.5.1.7  DNA ligase (ATP, ADP or GTP)
     L6E24_09630
DNA replication proteins [BR:mend03032]
 Eukaryotic type
  DNA Replication Elongation Factors
   Other elongation factors
    L6E24_09630
 Prokaryotic type
   Elongation factors (archaeal)
    Other elongation factors
     L6E24_09630
DNA repair and recombination proteins [BR:mend03400]
 Eukaryotic type
  SSBR (single strand breaks repair)
   BER (base exicision repair)
    Long Patch-BER factors
     L6E24_09630
   NER (nucleotide excision repair)
    Other NER factors
     L6E24_09630
   MMR (mismatch excision repair)
    Other MMR factors
     L6E24_09630
SSDB
Motif
Pfam: DNA_ligase_A_M DNA_ligase_A_N DNA_ligase_A_C RNA_ligase E3_UbLigase_EDD
Other DBs
NCBI-ProteinID: UUX91630
UniProt: A0A9E7PKM3
LinkDB
Position
complement(2181213..2182862)
AA seq 549 aa
MNFIDFSEFCNTLESISGRLEMIDLIAEKLPGLSDEDMPVFLRFITGRVFPDYSQDKIGI
GPNHVYESVAYVIGKNRDYVIRKINSGGDVGKAVENLLAKKEQTSFFSDTLELAGVFSDF
KAISEIKGSKSQKEKLKFVKRLFANAKPVEGRYLARIMLGEMRIGVGDGNIREAVAKAFS
VPAALVEHAYQAVNDLGEVALLAKRGAHALEEVKIELFRPVKMMLAKQGTIADMIQEQGS
IAAEFKYDGTRFQFHKKGDSFKIYSRKLEDVTNAIPDISDLLMNCTEHDVILDGEVIAIE
DGKPMPFQYVLKRFRRKHDIEAHVEDIRLRPNVFDILLLDDESLIEKPFTERRKILEDNV
REYVAPQIVSGDIAEVEEFYRNALDEGHEGIMVKSLSAAYTPGQRVREWIKIKPEVDTID
LAVIGAEWGEGKRAGLFGSFLLACRDENDELYPVSKVATGISDDMLAFIYDTLKESVISE
SGKFVRFEPETVFEVGYAEIQKSVNYESGYALRFPRFVRMRDDKGIDEIETISSINERFA
IQNEKRGIK
NT seq 1650 nt   +upstreamnt  +downstreamnt
atgaatttcattgatttttcagaattctgcaacacccttgaatcaatttccggaaggctt
gagatgatagatctcattgcagagaaactgccaggtctgtcagatgaggatatgccggta
ttcttaaggtttatcacaggacgggtatttccggactacagccaggataagataggcatc
ggcccaaatcacgtctatgaatcggttgcatacgtcatcgggaagaacagggactatgtc
atcaggaaaataaattccggaggggacgtagggaaggctgtggagaatcttcttgcaaag
aaggaacagacctcatttttcagtgacacactcgaactcgcaggtgtcttttcggacttc
aaagccatttcagagataaaaggctctaaatcccagaaggaaaaactgaaatttgtaaag
cgcctctttgccaacgcaaagccggttgaagggcgttatcttgcaaggattatgcttggt
gagatgagaataggtgttggtgacggaaatataagggaggccgtagcaaaggcattttca
gttccggcagcgctcgttgagcacgcataccaggcagtaaatgacctgggagaggttgcc
cttcttgcaaagagaggagcacatgcgcttgaggaggttaagattgaactcttccggcct
gtaaaaatgatgcttgcaaagcagggcactattgctgatatgattcaggaacagggcagt
attgctgctgagtttaaatacgacggaacaaggtttcagtttcataaaaaaggagacagt
tttaagatctattccagaaaacttgaggatgtcaccaatgcaatccctgacatatcagat
ctcctgatgaactgtacagagcatgatgtaattcttgacggggaggtcatcgccattgaa
gacggaaaaccgatgccctttcagtatgtccttaaaagattcaggcgtaagcacgatatc
gaggcccatgttgaagatatccgcctgagaccaaacgtctttgatattctcctgcttgat
gacgaatccttaatagagaaaccattcactgagagaagaaagattcttgaggataatgtg
agggagtatgtcgccccgcagatcgtatccggagatattgcagaagtggaggaattttac
agaaatgcccttgacgaagggcatgaaggtataatggtcaagtcactctccgcagcctac
actcctggtcagagggtgagggaatggataaagattaagccggaggttgatacgattgac
cttgctgtaatcggtgctgaatggggtgaaggcaaacgcgcaggcctctttggatccttc
ctcctcgcatgccgcgatgagaatgatgaactatatccggtatcaaaggtcgcaaccgga
atttcggatgatatgctggcctttatttatgacacccttaaagagagtgtcatctcagag
tccggcaagtttgtcaggtttgaaccggagactgtctttgaggtgggatatgcagagatt
cagaagagtgtcaattatgagtcaggctatgccctgcgttttccgagatttgtcagaatg
cgcgatgacaagggaatagacgaaatagagacgatatcatccatcaatgagagatttgcc
atacagaatgagaaacgcggaataaaataa

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