KEGG   Mesorhizobium erdmanii: EB233_04000
Entry
EB233_04000       CDS       T06791                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
merd  Mesorhizobium erdmanii
Pathway
merd03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:merd00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    EB233_04000 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:merd03400]
    EB233_04000 (ligD)
Enzymes [BR:merd01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     EB233_04000 (ligD)
DNA repair and recombination proteins [BR:merd03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     EB233_04000 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S RNA_ligase mRNA_cap_enzyme
Other DBs
NCBI-ProteinID: QKC74808
UniProt: A0A6M7UFC7
LinkDB
Position
844031..846529
AA seq 832 aa
MAGLEQYHAKRDFKKTSEPAGKVSRTGKSDAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAKA
MKKGHISFELKGHKLHGLWHLVRLKPRPGEKRDNWLLIKSDDAAARPGEDILKEAPQSVK
SGLTIEEVGEGKAAKGHKPDVWHSNKPAAGKAKPGKRLDFIEPQLATLERDAPSGEDWLH
EVKFDGYRMQAQIAGTDVRLLTRTGLDWTEKFGGEIVAELAALKCSDAIVDGEIVVLADS
GVSSFSLLQQDLSANRTNRFIYYVFDLMRLDGKDLRREPLVERKQALQDLLGKQPENAAV
RFSDHFFDPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYLP
SDKTGRGLRSLLVGYYEAGKLHYAGRVGTGFSAKGANELKKRLDALKAAASPFDAAVPKG
KGLVWVKPQLVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATAKARPASSD
TGTSAGTMTTSVKLSHPDKLLWPEEKISKQGLLDHYARVWPRMEQFVVNRPLSLVRAPDG
VGGPRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDGVAALVQYGVVEIHIWGCMIDK
LEQPDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSA
DWEAVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKK
GATVSMPVTWTEIEAGLAPNAFPIGDKTTLAKLSEADPWKGFFEAGKVLKRG
NT seq 2499 nt   +upstreamnt  +downstreamnt
atggccggcctcgaacaatatcacgccaagcgcgatttcaagaagacgtccgagccggcc
ggcaaggtttcgcggaccgggaaaagcgacgcgggcggcatcttcgtcatccacaaacac
gcggcgacaaggctgcattacgacctccgcctcgagcatggcggcgtgctgtggagctgg
gcggtgacgcgagggcccagcctcgatccgcatgaaaagcggctggccgtccatgtcgag
gatcatccgatcgactacgcgccgttcgagggcacgattccgaagggcgaatatggcggc
ggctcggtcatcgtctgggacgagggcacgtgggttcctgaaaccgacccggccaaggcg
atgaagaagggccatatcagcttcgagctcaagggccacaagctgcacgggctgtggcat
ctggtgcggctgaaaccccgcccgggcgaaaagcgcgacaactggctgctgatcaagtcg
gacgatgcggcggcgcgccctggcgaggatattctcaaggaggcgccgcaatcggtgaag
tccgggctgaccatcgaagaggtcggcgagggcaaggcggccaagggccacaagcctgat
gtctggcactccaacaagccggcggccggcaaggcgaagcccggcaagcgcctcgacttc
atagaaccgcagctcgcgacgctggagcgggatgcgccctcgggcgaggactggctacac
gaggtgaagttcgacggctatcgcatgcaggcgcagatagcaggcaccgatgtgcggctt
ttgacccgcaccggcctcgactggacggagaaattcggcggcgagatcgtcgcggaactg
gcagcgttgaaatgcagcgatgccatcgtcgacggcgagatcgtcgtgctggccgacagc
ggcgtttcgtctttctccctgctgcagcaggacctgtctgccaaccgcaccaaccgattc
atctactatgtctttgacctcatgcgccttgacggcaaggatctgcgccgcgaacccctg
gtggagcgcaagcaggccttgcaggatctgctgggcaaacagccggagaatgcggcggtg
cgtttctccgaccacttctttgaccccggcaagattatgctggagcatgcctgccgcatg
gggctggaaggcgtcgtctccaaacgcgccgatgcgccttatcgcagcgggcgcggccca
acatgggtcaagtcgaaatgcacggcgcggcaggaattcgtcatcggcggctatctgcca
tctgacaagaccgggcgtggcctgcgctcgctgcttgtcggctattacgaagccggcaaa
cttcactatgccgggcgagtcggcaccggcttctcagccaagggcgccaacgaactcaag
aagaggctcgatgcgctgaaggcggcggcttcgcccttcgacgcggccgtgcccaaggga
aaggggctggtctgggtgaagccgcagcttgtcggcgaagtggagttccgcagctggaca
tcggaccgtataatacgccatgcctcgttccaggggctgcgcgaggacaagccggcggag
gacgttgtgcaggaaaagcccaaggcagcgacagccaaggcaaggccggcctcaagcgac
accggtacatccgccgggacgatgacgaccagcgtcaaactctcccatcccgacaagctg
ctgtggcccgaggaaaagatttccaagcagggcctgctcgaccattacgcgcgggtctgg
ccgcgcatggagcagttcgtcgtcaaccggccgctcagcctggtgcgcgcgccggacggc
gtcggtggcccgcgtttcttccagaaacacgcctcggccggcatgagcgacaagattgcc
cggatgaaggacccgacggacggcgaggagatcctgttcatccgggatttcgacggtgtc
gcggcgctcgttcaatatggcgtggtcgagatccacatctggggctgcatgatagacaag
ctcgaacagccggaccagatcatcttcgacctcgaccccgatgaaggcgtcgatgtgaaa
gcggtgcgcgaagcggcgctcgacatcaggggcaagctcgacgaattgtcgctgcctaac
ttcgtcaagacatcaggcggaaagggctatcacgtgctggtgccgctgaagccgtcggcg
gattgggaggcggtaaagaccttcgcccatgattttgccaaggcgctggagcagggtgcc
cccgaccgctacacggcgacgttgtcgaaaaaggcgcgcaccggaaagatcttcgtcgac
tatctgcgcaatggccggggctcgaccacggtcgcgccctattcgtcgcgggccaagaag
ggggcgacggtatcgatgccagtgacctggaccgagatcgaggccggcctggcaccgaac
gcatttccgatcggggacaagacgacgctggccaagctgtcggaagccgatccgtggaag
gggtttttcgaggcggggaaggtgttgaagcgggggtga

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