Mesorhizobium erdmanii: EB233_04000
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Entry
EB233_04000 CDS
T06791
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
merd
Mesorhizobium erdmanii
Pathway
merd03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
merd00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EB233_04000 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
merd03400
]
EB233_04000 (ligD)
Enzymes [BR:
merd01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EB233_04000 (ligD)
DNA repair and recombination proteins [BR:
merd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EB233_04000 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QKC74808
UniProt:
A0A6M7UFC7
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All DBs
Position
844031..846529
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AA seq
832 aa
AA seq
DB search
MAGLEQYHAKRDFKKTSEPAGKVSRTGKSDAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWVPETDPAKA
MKKGHISFELKGHKLHGLWHLVRLKPRPGEKRDNWLLIKSDDAAARPGEDILKEAPQSVK
SGLTIEEVGEGKAAKGHKPDVWHSNKPAAGKAKPGKRLDFIEPQLATLERDAPSGEDWLH
EVKFDGYRMQAQIAGTDVRLLTRTGLDWTEKFGGEIVAELAALKCSDAIVDGEIVVLADS
GVSSFSLLQQDLSANRTNRFIYYVFDLMRLDGKDLRREPLVERKQALQDLLGKQPENAAV
RFSDHFFDPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYLP
SDKTGRGLRSLLVGYYEAGKLHYAGRVGTGFSAKGANELKKRLDALKAAASPFDAAVPKG
KGLVWVKPQLVGEVEFRSWTSDRIIRHASFQGLREDKPAEDVVQEKPKAATAKARPASSD
TGTSAGTMTTSVKLSHPDKLLWPEEKISKQGLLDHYARVWPRMEQFVVNRPLSLVRAPDG
VGGPRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDGVAALVQYGVVEIHIWGCMIDK
LEQPDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVPLKPSA
DWEAVKTFAHDFAKALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYSSRAKK
GATVSMPVTWTEIEAGLAPNAFPIGDKTTLAKLSEADPWKGFFEAGKVLKRG
NT seq
2499 nt
NT seq
+upstream
nt +downstream
nt
atggccggcctcgaacaatatcacgccaagcgcgatttcaagaagacgtccgagccggcc
ggcaaggtttcgcggaccgggaaaagcgacgcgggcggcatcttcgtcatccacaaacac
gcggcgacaaggctgcattacgacctccgcctcgagcatggcggcgtgctgtggagctgg
gcggtgacgcgagggcccagcctcgatccgcatgaaaagcggctggccgtccatgtcgag
gatcatccgatcgactacgcgccgttcgagggcacgattccgaagggcgaatatggcggc
ggctcggtcatcgtctgggacgagggcacgtgggttcctgaaaccgacccggccaaggcg
atgaagaagggccatatcagcttcgagctcaagggccacaagctgcacgggctgtggcat
ctggtgcggctgaaaccccgcccgggcgaaaagcgcgacaactggctgctgatcaagtcg
gacgatgcggcggcgcgccctggcgaggatattctcaaggaggcgccgcaatcggtgaag
tccgggctgaccatcgaagaggtcggcgagggcaaggcggccaagggccacaagcctgat
gtctggcactccaacaagccggcggccggcaaggcgaagcccggcaagcgcctcgacttc
atagaaccgcagctcgcgacgctggagcgggatgcgccctcgggcgaggactggctacac
gaggtgaagttcgacggctatcgcatgcaggcgcagatagcaggcaccgatgtgcggctt
ttgacccgcaccggcctcgactggacggagaaattcggcggcgagatcgtcgcggaactg
gcagcgttgaaatgcagcgatgccatcgtcgacggcgagatcgtcgtgctggccgacagc
ggcgtttcgtctttctccctgctgcagcaggacctgtctgccaaccgcaccaaccgattc
atctactatgtctttgacctcatgcgccttgacggcaaggatctgcgccgcgaacccctg
gtggagcgcaagcaggccttgcaggatctgctgggcaaacagccggagaatgcggcggtg
cgtttctccgaccacttctttgaccccggcaagattatgctggagcatgcctgccgcatg
gggctggaaggcgtcgtctccaaacgcgccgatgcgccttatcgcagcgggcgcggccca
acatgggtcaagtcgaaatgcacggcgcggcaggaattcgtcatcggcggctatctgcca
tctgacaagaccgggcgtggcctgcgctcgctgcttgtcggctattacgaagccggcaaa
cttcactatgccgggcgagtcggcaccggcttctcagccaagggcgccaacgaactcaag
aagaggctcgatgcgctgaaggcggcggcttcgcccttcgacgcggccgtgcccaaggga
aaggggctggtctgggtgaagccgcagcttgtcggcgaagtggagttccgcagctggaca
tcggaccgtataatacgccatgcctcgttccaggggctgcgcgaggacaagccggcggag
gacgttgtgcaggaaaagcccaaggcagcgacagccaaggcaaggccggcctcaagcgac
accggtacatccgccgggacgatgacgaccagcgtcaaactctcccatcccgacaagctg
ctgtggcccgaggaaaagatttccaagcagggcctgctcgaccattacgcgcgggtctgg
ccgcgcatggagcagttcgtcgtcaaccggccgctcagcctggtgcgcgcgccggacggc
gtcggtggcccgcgtttcttccagaaacacgcctcggccggcatgagcgacaagattgcc
cggatgaaggacccgacggacggcgaggagatcctgttcatccgggatttcgacggtgtc
gcggcgctcgttcaatatggcgtggtcgagatccacatctggggctgcatgatagacaag
ctcgaacagccggaccagatcatcttcgacctcgaccccgatgaaggcgtcgatgtgaaa
gcggtgcgcgaagcggcgctcgacatcaggggcaagctcgacgaattgtcgctgcctaac
ttcgtcaagacatcaggcggaaagggctatcacgtgctggtgccgctgaagccgtcggcg
gattgggaggcggtaaagaccttcgcccatgattttgccaaggcgctggagcagggtgcc
cccgaccgctacacggcgacgttgtcgaaaaaggcgcgcaccggaaagatcttcgtcgac
tatctgcgcaatggccggggctcgaccacggtcgcgccctattcgtcgcgggccaagaag
ggggcgacggtatcgatgccagtgacctggaccgagatcgaggccggcctggcaccgaac
gcatttccgatcggggacaagacgacgctggccaagctgtcggaagccgatccgtggaag
gggtttttcgaggcggggaaggtgttgaagcgggggtga
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