Chelativorans sp. BNC1: Meso_1150
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Entry
Meso_1150 CDS
T00374
Name
(GenBank) ATP-dependent DNA ligase LigD polymerase module / ATP-dependent DNA ligase LigD phosphoesterase module
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mes
Chelativorans sp. BNC1
Pathway
mes03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
Meso_1150
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mes03400
]
Meso_1150
Enzymes [BR:
mes01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
Meso_1150
DNA repair and recombination proteins [BR:
mes03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
Meso_1150
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
ABG62546
UniProt:
Q11J79
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All DBs
Position
1256494..1259031
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AA seq
845 aa
AA seq
DB search
MALTTYRRKRNFSATPEPPGEEKASPRGDSFVIQKHAARRLHYDLRLEMDGVLKSWAVTR
GPSLVPGEKRLAVHVEDHPLDYGDFEGTIPKGEYGGGTVIVWDRGSWSPIGDAKKGYAKG
HLEFELHGEKLTGRWHLVRMAKKPREKKENWLLIKGEDDAARSEADPDILEERPESVKTG
RVIEEVEGEAPGWSSKTGRIEQPAEAKPARKKRATKAGSEKSAGEKISVPKRAKKAGYPG
FIEPALATLRSTPPPGGRWLHEIKFDGYRLQAHIRDGKARLLTRSGLDWTEKFGDAIVTA
LGSLPVRQAIMDGELIVEGAGGASDFSALQAALSEGRVDRMALYLFDLLYLDGYDFRPVP
LAERKATLQKLLDGAPPVLRYSEHFEEDGELVFRHACRLSLEGIVSKAGDAAYRSGRGKD
WIKSKCSMRQEFVVAGYVPSTTSNRAIGSLVLGYYENERLIYAGRVGTGFSHALAQDLFK
RLDKMRIAKSPFAKKLTSEEARGAKFVRPELVAEVEFRTWTADNLIRHASFRGLREDKSA
TDVTRETNQSKPAERAAPAIRLTHPDRIYWKDAGVTKQGLSDYYAEVWPRMGPFIVNRPL
ALVRCPDGVEGQCFFQKHAWRGQSHEIMKAVDPEDDEPIIAIDGLPGLIGLVQGGTLEIH
PWGSQLEDLERPDLINMDLDPGPDVTWQDVIDAAREVRERLAQAGLESFVKTSGGKGLHV
VAPLKPRADWPEVKAFAKGIADAMASDTPERFVATVTKAKRKGKILVDYLRNGRGATAVA
PYSTRARAGAAVSMPLFWEELSPAITADYFTVANAPTRLAAIGKDPWEDFWRAAVPLGRK
ARRAA
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggcgctcaccacctatcgcaggaagcggaacttttcagctacgcccgagcctccgggt
gaggagaaggcttcgccgcgcggcgatagtttcgtgatccaaaagcacgccgcgcgccgc
cttcattacgatcttcggctggagatggatggggttctcaagagttgggcggtcacgcgc
gggccgagtctcgtgccgggcgaaaagcggcttgccgtccatgtggaggatcacccgctc
gattatggcgatttcgaagggaccattcccaagggcgaatatggcggcgggaccgttatc
gtctgggaccgcggaagctggtctccgatcggtgatgcgaaaaagggttatgccaagggc
catctggaattcgaattgcacggcgagaagctgacgggccgctggcatctggtgcgcatg
gcgaagaagccgcgcgagaagaaggaaaactggctgctcattaagggcgaggacgatgcc
gcgcgcagcgaggctgatccggatattctggaggagcgcccggagtcggtgaaaaccgga
cgggtgatcgaagaggtggaaggcgaggcgccgggctggtcgtcgaagaccgggcggatc
gagcagccggcggaggcaaaaccggcgcggaagaagcgcgcgaccaaggccggtagcgag
aaatccgctggcgagaaaatttcggtacccaagcgggcgaagaaagcgggctatcccggc
ttcatagagccggcgctcgccacattgcgcagcacgcctccgcccggcggcaggtggttg
cacgagatcaagttcgacggctatcggctgcaagcgcatatccgcgacggcaaagcgcgg
ctattgacgcgcagcggcctcgactggaccgaaaaatttggggacgcgatcgtgaccgcc
ttgggcagccttcccgtccggcaggccattatggacggagaactgatcgtggagggagcg
ggcggcgcttcggacttctccgccctccaggcagcgctatccgaaggtcgcgtcgaccgc
atggcgctctatctgttcgacctgctctatcttgacggctacgacttccgccccgttccg
ctggctgagagaaaagccaccctccagaagctcctcgatggcgcgccaccagtcctgcgc
tacagcgagcatttcgaagaggatggcgagcttgttttccgccatgcctgccgcctgagt
cttgaaggcattgtctcgaaggccggcgatgcggcctatcgttccgggcgcggcaaggat
tggatcaagtcgaaatgttccatgcggcaggagttcgtcgtcgcgggttacgtgccatcc
accacctccaaccgcgccatcggttcactggtgctgggctattatgaaaacgagcggttg
atatatgccggccgtgtcggcaccggcttcagccatgcgcttgcgcaggatcttttcaag
cgtctggataaaatgcgcatcgcgaaaagccccttcgcaaagaagctgacgtctgaagaa
gcgcgcggcgcgaaattcgtgcggcccgagctcgtggcggaagtggagtttcggacttgg
acagccgacaacttgatccgccatgcctccttccggggtctgcgggaggataaaagcgcg
acggatgtcacccgcgagacgaaccaatccaagcccgccgagcgcgcggcgcctgcaatc
aggcttacgcacccggaccggatttactggaaggatgccggtgtcaccaagcaggggctc
tcggactattatgcggaagtctggccgcgcatgggtcctttcatcgtcaatcgtccgctg
gcgcttgtgcgctgtcccgatggtgttgagggccagtgcttctttcagaagcatgcctgg
cgcggtcaatcccacgagatcatgaaagccgtagacccggaggacgacgagcccattatc
gccatcgatggtctgccgggcctgatagggcttgtgcagggcggcacgctggagatccac
ccgtggggatcgcaactggaggatctggagcgccccgacctcattaatatggaccttgat
cctggcccggatgtcacctggcaggacgtgatcgatgccgcaagggaggtgcgcgagcgg
ctggcgcaagcgggccttgaaagctttgtgaagacgtccggcggcaagggcctgcatgtt
gtggcgccgctgaagccgcgcgcggattggcctgaggtgaaggccttcgcaaagggcatc
gccgatgcgatggcttccgacacacccgagcgcttcgttgccaccgtgacgaaagccaag
cgcaagggaaagatccttgtcgactatcttcgcaacggcaggggggcgacggccgtcgca
ccctattccacacgggcgcgggcgggggcggcggtgtcgatgccgctgttctgggaggaa
ctgagccccgccatcaccgccgattattttaccgtggccaatgctccaacacgtttggcc
gccattgggaaggacccgtgggaggatttttggcgggcggcggtgccgcttggcaggaag
gcgcgccgcgccgcgtga
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