Chelativorans sp. BNC1: Meso_1702
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Entry
Meso_1702 CDS
T00374
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mes
Chelativorans sp. BNC1
Pathway
mes03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mes00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Meso_1702
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mes03400
]
Meso_1702
Enzymes [BR:
mes01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Meso_1702
DNA repair and recombination proteins [BR:
mes03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Meso_1702
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
CarD_TRCF_RID
UvrB_inter
ResIII
MFD_D3
RecG_dom3_C
UB2H
SecA_DEAD
AAA_16
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ABG63097
UniProt:
Q11HM8
LinkDB
All DBs
Position
complement(1819343..1822846)
Genome browser
AA seq
1167 aa
AA seq
DB search
MNELIDPIGLARRNGPAIVDGVADGYEPFALARISAEIAPDGPLIFVVRDGQRLPLIAEA
LQFAAPGLPVMTLPAWDCLPYDRVSPGADAAARRLDALSAMAALKKNPHRAVVLVSANAV
LQRMPPAKHIAAQGFRAKPGNQVDMEALIGRLETAGFERVPTVRDMGQYAVRGGILDLFA
PGWEEALRLDFFGDTLDSIRAFDVATQRTTGQRTEVMLQAMSEVMLTPDTVSRFRRHYIE
TFGAPSRDDALYAAISEGRRFSGMEHWLPLFYDGLETVFDYLPDAPLVFDHLAQEAVNER
HALINDHYEARKRQLSEGAGLGDSVPYKPIEPQQLYLDPQEILAAAEARAFIQLTPFATP
EAGGAKVFHAGALAGRSFAERADPNANVFDHVVKHIGERRAHGKHVLIAGWSEGSADRLS
QILAEHGLGGVARVTSLGELAKLPKGQAGLGVLPLETGFETPKLVVVAEQDILGDRLVRR
SKRRKRAADFISEASALSAGDIVVHADHGIGRFVGLKTIEAAGAPHECLEIHYAGDDRLF
LPVENIELLSRYGSDSAEATLDKLGGGAWQSRKAKLKKRLLEMAGQLIKLAAERQMRPAA
KIMPPEGLYGEFAARFPYEETDDQQTAIDAVIEDFSSGRPMDRLVCGDVGFGKTEVALRA
AFLAAMEGLQVAVVVPTTLLARQHFKTFRDRFAGLPVTVRQASRLVTAKELAETKKGVAD
GTVDIVVGTHALLGNSIQFKNLGLLIIDEEQHFGVKHKERLKELKADVHVLTLSATPIPR
TLQLALTGVRELSLIATPPVDRMAVRTFISPFDPLVIRETLLRERYRGGQSFYVVPRISD
LAEVKEFLAEQVPELKVATAHGQIAAGELDDIMNAFYDGKYDVLLSTTIVESGLDIPTAN
TLIVHRADMFGLAQLYQLRGRVGRSKVRAYALFTLPANRTLTPTAERRLKVLQSLDALGA
GFQLASHDLDIRGAGNLLGEEQSGHIKEVGYELYQQMLEEAVAELRGTGETADTGWSPQI
TVGTAVMIPEHYVPDLQLRLGLYRRLGEIETPEEIDGFGAELIDRFGPMPEEVQHLLKIV
YIKALCRRANVEKLDAGPKGVVLHFRNKEFPEPAGLVRFIGEQGQLAKIRPDQSVVFIRD
WPTPEKRLAGAAVVMTQLVRLVEKQAA
NT seq
3504 nt
NT seq
+upstream
nt +downstream
nt
atgaacgagctgatagatcccatcggccttgcgcgccggaacggccccgcaatcgttgac
ggagttgccgacggttacgagccctttgcgctggcgcgcatctccgctgaaattgcgcct
gacgggccgctgatctttgtggtgcgcgacgggcagcgcttgccgctcatcgcggaggcg
ctgcagttcgcagcgcccggcctgccggtgatgacgttgccggcctgggactgcctgcct
tatgaccgggtctctcccggcgccgatgccgccgcccgcaggctcgatgcactttcggcc
atggctgccctgaaaaagaatccgcatcgcgccgtggtgctggttagcgcaaacgcggtt
ctccagcgcatgccgccggcaaagcacatcgcggcacagggatttcgcgccaagcccggc
aaccaggtggacatggaggcgctcatcgggcggctggagacggctggcttcgagcgcgtt
cccacggtgcgcgatatgggccaatatgccgtgcgcggcggcattctcgacctcttcgca
cccggctgggaagaggcgctgcggctcgatttcttcggcgacacgctcgattccatccgt
gctttcgacgtggccacccagcgcacgacaggtcaacgcaccgaggtgatgctgcaggcc
atgagcgaggtgatgctgacgccggacacggtaagccgcttccgccgccactatatcgag
acgttcggtgcgccctcgcgcgacgacgcgctctatgccgcgatatcggaagggcggcgc
ttctccggcatggagcactggctgccgctcttctatgacgggctggagaccgtgttcgac
tatctgccggacgcgccgctcgtcttcgaccatctggcgcaggaggcggtgaacgaacgg
cacgcgctgatcaacgaccattatgaggcgcgaaagcgccagctctccgaaggcgcgggg
cttggagattctgtgccctataagccgatcgagccgcagcagctctatctcgatccgcag
gaaatcttagcggcggccgaagcgcgggctttcattcagctcacgcctttcgccacgccc
gaggctggcggcgccaaggtgttccatgcgggtgctttggcggggcgcagcttcgccgag
cgcgccgatcctaacgccaatgtcttcgaccatgtggtcaagcatatcggagaaaggcgg
gcgcacgggaagcatgtattgattgccggctggagcgagggttcggccgaccggctgagc
cagatcctagccgagcatgggctaggcggcgttgcgcgcgtgacaagcctgggcgagctc
gccaaattgccgaaagggcaggcggggcttggggtcctgccgctggagacgggtttcgaa
accccgaagctggtcgttgtcgcggaacaggatattctaggagaccggctcgtgcgccgc
tccaagcggcgtaagcgggcggcagatttcatctccgaggcaagtgccctgtcggcaggc
gatatcgtcgtccatgccgaccatggcatcggccgtttcgtcggcctcaaaacgatcgaa
gcggcaggggctccgcacgagtgcctggaaatccactatgccggcgacgaccggcttttc
ctgccggtcgaaaatatcgagctactgtcgcgctatggctccgactctgcggaggcaacg
ctcgacaagctcggcggtggtgcatggcagtcgcgtaaggcgaagctgaagaagcgcctc
ctcgaaatggcgggccagctgatcaagcttgccgccgagcggcagatgcgcccggcagcg
aagatcatgccgcccgaggggctttatggcgaattcgccgcacgcttcccttatgaagag
acggacgaccagcagaccgccattgatgctgtcatcgaggatttcagctccggccggccc
atggaccgactcgtttgcggcgatgtgggcttcggcaagaccgaagtggcgctcagagcc
gcattcctggcggccatggagggccttcaggtggcggtggttgtgccgaccacgctgctc
gcccgtcaacatttcaagacctttcgcgatcgctttgcggggcttcccgtgaccgtgcgg
caggcctcgcgcctcgtcacggcgaaggaactcgcggagacgaaaaagggggtggcggac
ggcacagtcgatatcgttgtgggcacgcacgctctgcttggcaattcgatccagttcaaa
aatctggggctgctgatcatcgacgaagagcagcatttcggcgtgaagcacaaggagcgg
ctgaaggagctgaaagcggacgtgcacgtgctgacgctctcagccacgccgatccctcgc
acgctgcagcttgcgctcacgggcgtgcgggaactctcgctgattgccacgccgccggtc
gaccgcatggccgttcgcacctttatctcgcccttcgatccgctcgtcatccgcgagacg
ctcctgcgcgagcgctatcgcggcggccagagcttctatgtcgtgccgcgcatctcggat
ctggcggaggtgaaggaattcctggcggagcaggtaccggagctcaaggttgcgaccgcg
catggccagatcgccgcgggtgaactcgacgacatcatgaacgccttctatgacggcaaa
tatgatgtgctcctctcgaccacgattgtggaatcgggcttggatattccaacggcaaac
acgctgatcgtgcaccgggccgacatgttcggcctggcgcagctttaccagctgcgcggc
cgtgtggggcgctcgaaggtgcgtgcctatgcgctcttcacgctgccggccaatcgcacg
ctcacaccgacggccgagcggcggctgaaggtgctgcagtcgctcgacgcgctgggcgcc
gggttccagcttgcaagccatgacctggatatccgcggagccggcaatcttctgggagaa
gagcagtcgggccacatcaaggaagtgggctacgagctctatcagcagatgctggaggag
gcggtggcagagctgcgggggaccggcgagacggccgatacaggctggtctccgcaaatc
accgtcggtacagcggtcatgatccccgagcattatgtgcccgacctccagcttcgtctc
ggcctttatcgccggcttggcgagatcgagacgccggaggagatcgatggtttcggcgcc
gaacttatcgaccgcttcgggccgatgccggaggaagtgcagcaccttctcaagatcgtc
tacatcaaggcgctctgccggcgggcgaatgtggagaagctcgatgccgggccgaagggc
gtggtgctccatttccgcaacaaggagttcccggaaccggctggcctggttcgcttcatc
ggtgagcaggggcagttggccaaaatcaggccggaccaaagcgtggtcttcatccgggac
tggccgacaccggaaaagcggcttgccggggccgctgtcgtgatgacgcagcttgtgcgg
ctggtggagaagcaggcggcctag
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