Manihot esculenta (cassava): 110608409
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Entry
110608409 CDS
T05761
Name
(RefSeq) polygalacturonase
KO
K01213
galacturan 1,4-alpha-galacturonidase [EC:
3.2.1.67
]
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc00040
Pentose and glucuronate interconversions
mesc01100
Metabolic pathways
Module
mesc_M00081
Pectin degradation
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09100 Metabolism
09101 Carbohydrate metabolism
00040 Pentose and glucuronate interconversions
110608409
Enzymes [BR:
mesc01000
]
3. Hydrolases
3.2 Glycosylases
3.2.1 Glycosidases, i.e. enzymes that hydrolyse O- and S-glycosyl compounds
3.2.1.67 galacturonan 1,4-alpha-galacturonidase
110608409
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Gene cluster
GFIT
Motif
Pfam:
Glyco_hydro_28
Pectate_lyase_3
NosD
Motif
Other DBs
NCBI-GeneID:
110608409
NCBI-ProteinID:
XP_043809697
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All DBs
Position
Unknown
AA seq
733 aa
AA seq
DB search
MASIIGRVEEACSAKGSNIVVVPKGTYSIGLTDLNGPCKGAMELQVQGTLLAPINPSSYA
KDSWITFAYIDQFKLSGGGTFDGQGQVAWKQNNCGRNPKCKRLPVVAKTLLSIASRSLHQ
EIASIQMEFTSGIQTGSTLLIQILPPAMTASPLVVPANKIRITNVRCGHGHGISVGSLGK
TTDEFVSGIFVRNCTFYDTDNGVRIKTWPALHGGMASDMHFEDIMMKNVRNPIIIDQMYC
PWNQCNPKLPSKVKISNVTFKNIRGSSATAVAVRLNCSSSFPCQKVELADINLTYGGKEG
PVTAWVDGQDTRMLLFVFFVFPFSIQSARSLVGFRLVVRVQSAVFDVKNYGGKADGKSDI
SKFPFQALLGAWKEACSAKGSNIVVVPKGTYSIGLTDLNGPCKGAMELQVQGTLLAPINP
SSYAKDSWITFAYIDQFKLSGGGTFDGQGQVAWKQNNCGRNPKCKRLPVSLRFDFITNSV
VQDVTSLDSKNFHVNLLGGKNLTFDRFTITAPGDSVNTDGIHIGHSNGINIINSNIATGD
DCISIGGASEQIRITNVRCGHGHGISVGSLGKTTDEFVSGIFVRNCTFYDTDNGVRIKTW
PALHGGMASDMHFEDIMMKNVRNPIIIDQMYCPWNQCNPKVTRKEMKMKESLNALCLFQL
PSKVKISNVTFKNIRGSSATAVAVRLNCSSSFPCQKVELADINLTYGGKEGPVKSLCANV
KPTLKGKLTPTIC
NT seq
2202 nt
NT seq
+upstream
nt +downstream
nt
atggcaagcattattgggcgcgtggaagaggcttgttcagcaaagggttccaacatagtt
gtagtacccaaaggaacatattccataggtttaactgacttaaatggtccatgcaaggga
gccatggagcttcaagtccaaggaaccttattggcaccgataaaccctagcagttatgcc
aaggacagctggattacttttgcatacattgatcaattcaaattatccggtggtggaacc
ttcgacggacaagggcaagtggcttggaagcaaaataactgcggtcgaaatccaaaatgc
aagagacttccagttgtggcaaaaaccttactttcgatcgcttcacgatcactgcaccag
gagatagcgtcaatacagatggaattcacatcgggcattcaaacgggatcaacattatta
attcaaatattgccaccggcgatgactgcatctccattggtggtgccagcgaacaaaata
aggatcacaaacgtacgatgtggacatggacatggcattagcgtgggaagtttagggaag
accactgatgaatttgtctccggaattttcgtaaggaactgcaccttctatgacaccgac
aatggagtgagaattaagacatggccggcattacatggtggcatggcctctgatatgcat
ttcgaggatattatgatgaaaaatgtccgcaaccctatcattatagatcaaatgtactgc
ccatggaatcagtgcaatccaaagcttccgtcaaaagttaagatctccaacgtcaccttc
aagaatattaggggctcttcagcgaccgcagtagctgttcgacttaattgcagcagcagt
tttccatgccagaaggtcgagctcgctgacattaacttgacgtacggaggaaaggaaggc
cctgttactgcgtgggtagacggccaagatactcgcatgttgctctttgtcttttttgtt
tttccattttctattcaatctgctcgctcactcgtcgggtttcgcctcgtcgtgcgagtt
caatctgccgtatttgatgtgaaaaattatggtggtaaagccgatggcaagtcagatatt
agcaagtttccttttcaggcattattgggcgcgtggaaagaggcttgttcagcaaagggt
tccaacatagttgtagtacccaaaggaacatattccataggtttaactgacttaaatggt
ccatgcaagggagccatggagcttcaagtccaaggaaccttattggcaccgataaaccct
agcagttatgccaaggacagctggattacttttgcatacattgatcaattcaaattatcc
ggtggtggaaccttcgacggacaagggcaagtggcttggaagcaaaataactgcggtcga
aatccaaaatgcaagagacttccagttagcttgcggtttgacttcatcaccaacagcgta
gttcaggacgtaacatcgctcgatagtaagaatttccatgtcaatcttctaggtggcaaa
aaccttactttcgatcgcttcacgatcactgcaccaggagatagcgtcaatacagatgga
attcacatcgggcattcaaacgggatcaacattattaattcaaatattgccaccggcgat
gactgcatctccattggtggtgccagcgaacaaataaggatcacaaacgtacgatgtgga
catggacatggcattagcgtgggaagtttagggaagaccactgatgaatttgtctccgga
attttcgtaaggaactgcaccttctatgacaccgacaatggagtgagaattaagacatgg
ccggcattacatggtggcatggcctctgatatgcatttcgaggatattatgatgaaaaat
gtccgcaaccctatcattatagatcaaatgtactgcccatggaatcagtgcaatccaaag
gtaacgcgaaaagaaatgaaaatgaaagagtctcttaatgcattatgtttgtttcagctt
ccgtcaaaagttaagatctccaacgtcaccttcaagaatattaggggctcttcagcgacc
gcagtagctgttcgacttaattgcagcagcagttttccatgccagaaggtcgagctcgct
gacattaacttgacgtacggaggaaaggaaggccctgtaaaatccttgtgtgcaaatgtt
aaacccacacttaagggaaaattgactccaaccatttgctag
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