Manihot esculenta (cassava): 110609258
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Entry
110609258 CDS
T05761
Name
(RefSeq) paired amphipathic helix protein Sin3-like 4 isoform X1
KO
K11644
paired amphipathic helix protein Sin3a
Organism
mesc
Manihot esculenta (cassava)
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03036 Chromosome and associated proteins [BR:
mesc03036
]
110609258
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HDAC complexes
Sin3A-HDAC complex
110609258
REST complex
110609258
Heterochromatin formation proteins
Other heterochromatin formation proteins
110609258
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAH
Sin3a_C
Sin3_corepress
DUF6697
Motif
Other DBs
NCBI-GeneID:
110609258
NCBI-ProteinID:
XP_021604407
LinkDB
All DBs
Position
1:36889370..36899632
Genome browser
AA seq
1439 aa
AA seq
DB search
MKRSRDDVYISSQLKKPMVSSRGETSVQPQMMAGGATSGGGGGGGGGSSGGGGQKLTTND
ALAYLKAVKDIFQDKREKYDDFLEVMKDFKAQRIDTAGVIARVKELFKGHRDLILGFNTF
LPKGYEITLPLEDEQPPQKKPVEFEEAINFVNKIKTRFQGDDHVYKSFLDILNMYRKENK
SITEVYQEVATLFQDHSDLLVEFTHFLPDSSAAASAHYAPSVRNSILRDRSSAMPTMRQM
HVDKKERTAASHADCDFSVDRPDPEHDRSLIRSDKDQRRRGEKEKERREDRDRREREDRD
YEHDGNCEFMQRFPPKRKPARRVEDAAEYQGGDADENFGMLPVSSTCDDKNAVKSALSQE
LAFCEKVKEKLRNPDDYQGFLRCLHLYTREIITRPELQSLVGDLLGKYPDLMEGFNEFLA
RCEKNEGLLAGVVSKKSLWNDGNLPRPVKLEDKDKDRDREREDGVKERERETRERDRLDK
NVAFSNNKDLGGHKMSLFSNKDKFLKPINELDLSNCERCTPSYRLLPKNYPIALASQRTE
LGAEVLNDHWVSVTSGSEDYSFKHMRKNQYEESLFRCEDDRFELDMLLESVNVTTKRVEE
LLEKINNNSIKTDSPIRIEDHLTALNRRCIERLYGDHGLDVMDVLRKNASLALPVILTRL
KQKQEEWARCRADFNKVWAEIYSKNYYKSLDHRSFYFKQQDTKSLSTKALLSEIKEISEK
KRKEDDVLLAFAAGNRRPIIPNLEFEYPDPEIHEDLYQLIKYSCGEVCTTEQLDKVMKIW
TTFLEPVLGVPSRPQGAEDTEDVVKAKNHSSKSGDSEGSPNGGGATVLNKHSNLSRNGDE
SIPPEQSSSCKAWLLNGDNGIKENGSPDADRIAHKSDTSCSTVQHDKMQINIASADETSV
VGNGKQATSNERLVNSNKSLVTGANLSNGQTNIESGLSIPTSRPSNGTVNSGLGLGSSNE
IVPSAEGRDFSRPTVSTNGVTTEGAKNPKYNDESAQQFKIEREEGELSPIGDFEEDNFAA
YGEGGLEALLKAKESAASRQYQTKHGGENDADADDEGDESAHRSSEDTENASENGDVSGS
ESGDGEDCSREEHEEDGEHDEHDNKAESEGEAEGMADAHDVEGEGTILPFSERFLLNVKP
LAKHVPPTLHDKEKGSRVFYGNDSFYVLLRLHQTLYERIQSAKINSSSAERKWRASNDTS
SIDQYARFMSALYNLLDGSSDNTKFEDDCRAIIGTQSYVLFTLDKLIYKLVKQLQTVATD
EMDNKLLQLYAYEKSRKPGRFFDVVYHENARVLLHDENIYRIECSSTPTHLSIQLMDFEH
DKPEVTAVSMDPNFAAYLHNDFLSVVPDKKEKPGIFLKRNKRRCVSHDECKATEGFQVFN
GLECKIACNSSKVSYVLDTEDFLFRTKKRRKILQPSSSCQEQANISRRVQHFHKWLSSS
NT seq
4320 nt
NT seq
+upstream
nt +downstream
nt
atgaagaggtcaagagatgatgtttacatcagctctcaacttaaaaaacccatggtttct
tctcgaggagaaacctcggtgcaaccccagatgatggcaggaggtgctactagtggtggt
ggaggaggaggaggaggtggcagcagcggcggcggtggacaaaaacttaccacaaatgat
gccttggcatatctcaaggctgtgaaggacatatttcaagacaaaagggaaaaatatgat
gactttcttgaggtcatgaaggatttcaaagctcaaagaattgacactgcaggtgtcata
gcaagggtgaaggagttatttaaagggcatcgtgacctaattttaggtttcaataccttc
ttgcctaagggatatgagatcacactacctctagaggatgaacaacctccacagaagaag
cctgttgaatttgaagaagcaattaattttgtgaacaaaattaagacaaggtttcaaggt
gatgatcatgtttacaaatcatttttagacattttgaacatgtacaggaaagaaaataaa
tccatcactgaagtctaccaagaggttgctacactttttcaagaccatagtgatctgctt
gtggagtttacccattttctacctgactcttcggctgcagcctctgctcactatgctcca
tctgttaggaattccattcttcgtgataggagctctgctatgcccacaatgcgccaaatg
catgtggataagaaagaaaggaccgctgcttcccatgctgattgtgacttcagtgttgac
cgtcctgatccagagcatgatagatctctgatcagatcagacaaagaccaaaggaggcgt
ggtgaaaaggaaaaggagaggagagaagatcgagataggagagaacgggaagatagagat
tatgagcatgatggtaactgtgaattcatgcaacggtttccccccaaaaggaaacctgct
cgtagggttgaagacgctgctgaatatcaaggtggggatgccgatgaaaactttggaatg
cttcctgtttcatccacttgtgatgataaaaatgctgtgaaaagtgctttaagccaagag
ctcgcattctgtgagaaagtgaaggaaaagttgcgtaatccagatgattaccagggattt
ttgaggtgtcttcacctatacaccagagaaataattacaagaccagaactgcaatctttg
gttggtgatttacttggaaagtatccagatcttatggagggcttcaatgaatttttggca
cgttgtgagaagaatgagggtctgctagctggtgttgtgagtaaaaaatccttgtggaat
gatggtaacttacccagacctgtcaagctagaggacaaggataaagatcgggatcgcgag
agggaagatggggtgaaagaaagagaacgtgaaacacgggaaagggatagacttgacaaa
aatgtagcatttagcaataataaagatttggggggtcataagatgtctttattttccaac
aaggataagtttttgaaaccaattaatgaactcgacctatctaactgtgagcgctgcact
cccagttatcgacttctgcccaagaattatcccatagctttagcgagccagaggacagaa
ctcggtgctgaagtactgaatgatcattgggtatctgtcacttcaggaagtgaagattac
tcttttaaacacatgcgcaaaaaccagtatgaagaaagcctgtttcgatgtgaagatgac
aggtttgagctggacatgttgttggagtctgttaatgtgacaaccaagcgtgtagaagaa
ctattagaaaagatcaacaacaactcaataaaaacagattctccaatacgtattgaggac
cacttaacagctctgaatcggaggtgtattgaacgtttatatggtgatcatgggctggat
gtgatggatgtattaaggaagaatgcttctcttgctttgccagtcatattaactcgtttg
aagcagaaacaagaagagtgggcaaggtgtcgtgctgatttcaacaaagtttgggctgaa
atttattccaagaactattataagtcccttgatcatcgtagtttctatttcaagcaacag
gatacaaagagcttgagcacaaaagccttattgtcagagatcaaggaaattagtgagaaa
aagcgtaaagaagatgatgtgcttcttgcatttgctgctggcaacagaagacctattata
cctaatttggaatttgagtatccagatcctgagattcatgaggatttataccagctcatc
aaatactcttgtggagaagtttgtacaactgaacagttggacaaagtgatgaagatttgg
acaactttcttggaacccgtgcttggtgttccttcccggcctcagggtgcagaagacact
gaagatgttgtgaaggcaaagaatcattcttccaaaagtggagatagtgaaggaagccca
aatggtggtggtgctacagtcctcaacaagcattcaaatctttcaaggaatggagatgag
agtatcccacctgagcaatcgagttcttgcaaggcttggttgcttaatggagataatggc
attaaggaaaatggttctccagatgcagatcgtatagctcacaagagtgatacttcctgc
agtactgttcaacacgataagatgcagattaatatagcctcagctgatgaaacatcagtg
gttggaaatggcaaacaagctacttcgaatgaacgattagtcaattcaaacaaatcactt
gtcacaggagcaaatctaagtaatggacaaactaacatagaatcaggacttagtattcct
acttcaagaccaagtaatggtacagttaatagcgggcttggattaggttcaagcaatgaa
attgtaccctcagcagagggtcgtgatttttcaagaccaactgtatccacaaatggggtg
acaacagaaggtgccaagaatcctaaatataatgatgaatctgctcaacaatttaaaatt
gaaagagaagaaggtgaattatctccaattggagactttgaggaggacaattttgcagct
tatggagaaggtggtttggaggctctgcttaaggcaaaggaaagtgctgcaagtaggcag
taccaaacgaaacatgggggagaaaacgatgctgatgctgatgatgaaggcgatgaaagt
gctcacaggtcatcagaggacactgagaatgcctctgaaaatggtgatgtatctggaagt
gaatctggtgatggtgaagattgctctcgggaagagcatgaggaagatggagaacatgat
gagcatgataataaagctgaaagtgaaggtgaggctgaagggatggctgatgcccatgat
gttgaaggagaaggaacgattttgccattttcagaacgttttcttctaaatgtgaagcct
ctagcaaagcatgtccctccaacattacatgacaaagaaaagggttctcgagttttctat
ggaaatgattccttctatgtgcttcttaggcttcaccaaacattgtacgagagaatacaa
tcagcaaaaatcaattcatcatctgctgaaaggaaatggagagcctcaaatgatacaagt
tcaattgaccaatatgccaggtttatgagtgctctttacaatttacttgatggttcttct
gataatacgaaatttgaggatgattgccgagctattattggaactcaatcatatgttctt
ttcacattggacaagttgatatataagcttgtcaaacagctccaaacagtggcaactgat
gaaatggacaacaagctgctccaactatatgcatatgaaaagtcaagaaaacctggaaga
ttttttgatgtagtttatcatgaaaatgcccgtgttcttctccatgatgagaacatatat
cgtatagaatgttcttctacaccaacccatttgtctattcagctaatggactttgaacat
gataagcctgaagtgactgcggtctccatggatcccaattttgcagcatatttgcacaat
gacttcctctccgttgttcctgacaaaaaggagaagcctgggattttcctgaaaaggaat
aaaagaagatgtgtcagtcatgatgaatgcaaggcaacagaaggatttcaagtttttaat
ggtctagagtgcaagattgcatgcaattcctccaaagtatcctacgttttagatacagaa
gattttttgttccgcaccaaaaagagaaggaaaattttgcaaccaagcagttcatgccaa
gagcaggcaaatatttcgagaagagtacagcactttcacaaatggctatccagttcatag
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