Manihot esculenta (cassava): 110618477
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Entry
110618477 CDS
T05761
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110618477
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110618477
03041 Spliceosome [BR:
mesc03041
]
110618477
03036 Chromosome and associated proteins [BR:
mesc03036
]
110618477
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110618477
Spliceosome [BR:
mesc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110618477
Complex B
110618477
Complex C
U2 SnRNP specific factors
110618477
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110618477
TFTC complex
110618477
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110618477
NCBI-ProteinID:
XP_021617305
LinkDB
All DBs
Position
7:complement(31474306..31479837)
Genome browser
AA seq
1213 aa
AA seq
DB search
MYLYSLTLQRATGIVSAINGSFSGGKTQEIVVARGKVLDLLRPDENGKLQTILSVEIFGA
IRSLAQFRLTGAQKDYIVVGSDSGRIVILEYNKERNVFDKIHQETFGKSGCRRIVPGQFL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNEGHPDVRAVIPRRADLPAERGVLIVSAATHKQKSMFFFLLQ
TEYGDIFKVTLDHENDKVKELKIKYFDTIPVTSSMCVLKSGFLFAASEFGNHALYQFQAI
GEEADVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVANLFDEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSIAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDVTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRGRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRIFTIERLGETFNETAIPLRYTP
RKFVLQPKKKLLIIIESDQGAYTAEEREAAKKECFEAAGMGENGSANDQMENGGDDEDKD
DPLSDEQYGYPKTESEKWVSCIRVLEPRTASTTCLLELQDNEAAFSVCTVNFHDKEHGTL
LAVGTAKGLQFWPKRSLVAGFIHIYKFVDDGRTLELLHKTQVEGVPLALCQFQGRLLAGI
GSVLRLYDLGKKRLLRKCENKLFPNSIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLYI
FADDCVPRWLTASYHIDFDTMAGADKFGNVYFVRLPQDVSDEIEEDPTGGKIKWEQGKLN
GAPNKVEEIVQFHVGDVITSLHKASLIPGGGECIIYGTVMGSLGALLPFTSRDDVDFFSH
LEMHLRQDHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQFPTLPLDMQRKIADELDRTPGE
ILKKLEEVRNKII
NT seq
3642 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtcttacgctgcaacgagctactggcatcgtctccgcaatcaatggc
agtttttccggcggcaagacccaagaaattgtagtagctcgtggaaaagttcttgatctc
ctccgtcccgatgagaacggtaagcttcagaccattctctctgttgaaatcttcggtgct
attcgctctctagctcagttcagactaactggagctcagaaggactatatagttgttggg
tctgattcaggaagaatcgtaattctggaatataacaaggagagaaatgtttttgataaa
atacaccaggaaacttttgggaaatctgggtgtcggcggattgttccaggtcagttcttg
gccattgacccaaaaggaagagctgtaatgataggtgcctgtgagaaacagaagctagtt
tatgttttgaatagagatactgctgctaggttgactatatcctcaccgttagaggcacat
aagtctcacacgattgtgtattctatttgtggtgttgattgtgggtttgataacccaata
tttgcggctattgagttggattattcagaggcagaccaggattcgacagggcaggctgcc
agtgaggcacagaagcatttgacattttatgagcttgatttagggcttaatcatgtgtct
aggaagtggtctgagcaggttgataatggggcaaatatgctcgttacagtgcctggaggg
ggggatggacctagtggagttttggtttgtgctgagaattttgtgatttacaagaatgag
gggcatccggatgtcagagcagtgatacctaggcgcgcagatttgcctgcagagagagga
gttctgatagtttctgcagctactcataagcagaagtccatgtttttctttcttttgcag
acagagtatggtgatattttcaaggttacattggatcatgagaatgataaggttaaggag
ttgaaaattaagtattttgatacaattcctgttacttcctcaatgtgtgtgttgaaatca
gggtttttgtttgctgcatcagagtttgggaatcatgcattgtatcagtttcaggcaatt
ggggaggaagctgatgttgaggcctcatcagctactttaatggaaactgaggaaggtttc
cagcctgtgtttttccagccaagagggttgaagaatcttgttagaattgaccaggttgag
agcttgatgcctattatggatatgaaggttgctaatctttttgatgaggaaacacctcag
atattctcactttgtgggcgcggtcctcggtcctcattgaggatattgaggccaggtttg
gccattagtgagatggctgtttcacagcttcctggtgtaccaagtgcagtctggactgtg
aaaaagaatgttaatgatgagtttgatgcatacattgttgtgtctttcaacaatgcaact
cttgtgctttcaattggagagacagttgaagaagtcagtgacagtgggtttcttgatact
acgccttccatagctgtttctttgattggtgatgattctttgatgcaagttcatccaaat
ggcattaggcatataagggaagatgggcgtataaatgaatggaggactcctggaaagaga
acaattgtgaaggttggttccaatagacttcaagtcgttattgctttaagtggaggggag
ctcatatattttgaggttgatgttactggtcagctaatggaagtggagaagcatgaaatg
tctggagatgtggcctgtttggatattgcccctgttccagaaggaagacagaggtcccga
ttccttgcagttggttcatatgacaacaccatccgtatcttatctttggatcctgatgat
tgtatgcaaattctgagtgttcaaagtgtttcatcgcctccagagtccctcctctttctt
gaggttcaggcatcagtaggtggggaggatggtgctgatcaccctgctagccttttcctt
aatgctggtttgcagtctggggttctattcaggacagtagtggacatggtgacaggccag
ctttctgattctcgttcccggttcttggggttgagggcaccaaaactcttctccatcatt
gtgagaggccggcgagcgatgttgtgcttatccagtcgaccctggctcggttatattcac
caggggcatttcctgttaacacctctttcatatgagactcttgaatttgctgcttcattc
tcatctgaccagtgtgcagaaggtgtggttgctgtagctggggatgctctgaggattttt
accattgaaaggttgggagaaacatttaatgaaactgcaatacctttgaggtatactccg
agaaagtttgtgcttcaacctaagaagaaacttttgattattattgaaagtgatcaagga
gcatatacagcagaggagcgtgaagctgccaaaaaggagtgctttgaggctgctgggatg
ggggaaaatggaagtgccaatgatcagatggagaatggtggtgacgatgaagataaagat
gatccgctctctgatgagcagtatggttatccaaagacagaatcagaaaagtgggtttct
tgcatcagagttcttgaaccaaggacagcatccacaacttgtctcctggagcttcaggac
aatgaagctgcatttagtgtgtgcacagtgaacttccatgacaaggagcatggaacactt
ttagcggttggtactgcaaagggactccagttttggcccaaaagaagtttagttgctggg
ttcattcacatctataagttcgtggatgatggcagaaccctggaacttttgcacaagaca
caagtcgaaggtgtaccacttgcattatgccagtttcagggaagactgctcgctggaata
ggatcggtgctcagactgtatgacctggggaagaagaggttgcttaggaaatgtgagaat
aagttgttccctaacagtattgtttctattcacacctatcgagataggatctatgtgggc
gatattcaagagtcattccatttttgcaagtataggcgggatgaaaatcagctctatata
tttgcagatgattgtgttccaagatggcttactgcatcataccacatagattttgatact
atggcaggtgctgacaagtttgggaacgtctattttgtgcggttgcctcaggatgtttct
gatgagatagaggaagatccaacaggtggaaagataaagtgggagcaggggaagctcaat
ggagctccaaacaaagtagaggagatagtacagtttcatgttggtgatgtgattactagc
ctgcataaagcatccctaattccaggtggtggagagtgcatcatatatgggacagtaatg
gggagcttgggggctctgcttccattcacctctcgagatgatgttgacttcttttcacac
ttggagatgcatttgaggcaggaccatccgccattgtgtggaagggatcatatggcatat
agatctgcatattttccagttaaggatgtgattgatggggatttatgtgagcagttccca
acacttcctctagatatgcagagaaaaattgcagatgaattggatagaacccctggggag
atactaaagaaacttgaagaagtacgaaataagataatttaa
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