Manihot esculenta (cassava): 110624692
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Entry
110624692 CDS
T05761
Name
(RefSeq) spliceosome-associated protein 130 A
KO
K12830
splicing factor 3B subunit 3
Organism
mesc
Manihot esculenta (cassava)
Pathway
mesc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
mesc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
110624692
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mesc03021
]
110624692
03041 Spliceosome [BR:
mesc03041
]
110624692
03036 Chromosome and associated proteins [BR:
mesc03036
]
110624692
Transcription machinery [BR:
mesc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
110624692
Spliceosome [BR:
mesc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
110624692
Complex B
110624692
Complex C
U2 SnRNP specific factors
110624692
Chromosome and associated proteins [BR:
mesc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
110624692
TFTC complex
110624692
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MMS1_N
CPSF_A
Motif
Other DBs
NCBI-GeneID:
110624692
NCBI-ProteinID:
XP_021625630
LinkDB
All DBs
Position
10:3802644..3808067
Genome browser
AA seq
1214 aa
AA seq
DB search
MYLYSLTLQRATGIISAINGSFSGGKTQEIVVARGKVLDLLRPDENGKLQTLLSVEIFGA
IRSLAQFRLTGSQKDYIAVGSDSGRIVILEYNKERNVFDKIHQETFGKSGCRRIVPGQYL
AIDPKGRAVMIGACEKQKLVYVLNRDTAARLTISSPLEAHKSHTIVYSICGVDCGFDNPI
FAAIELDYSEADQDSTGQAASEAQKHLTFYELDLGLNHVSRKWSEQVDNGANMLVTVPGG
GDGPSGVLVCAENFVIYKNEGHPDVRAVIPRRADLPAERGVLVVSAATHKQKSMFFFLLQ
TEYGDIFKVTLDHENDKVKELKIKYFDTIPVTASMCVLKSGFLFAASEFGNHALYQFQAI
GEEADVEASSATLMETEEGFQPVFFQPRGLKNLVRIDQVESLMPIMDMKVFNLFDEETPQ
IFSLCGRGPRSSLRILRPGLAISEMAVSQLPGVPSAVWTVKKNVNDEFDAYIVVSFNNAT
LVLSIGETVEEVSDSGFLDTTPSLAVSLIGDDSLMQVHPNGIRHIREDGRINEWRTPGKR
TIVKVGSNRLQVVIALSGGELIYFEVDVTGQLMEVEKHEMSGDVACLDIAPVPEGRQRSR
FLAVGSYDNTIRILSLDPDDCMQILSVQSVSSPPESLLFLEVQASVGGEDGADHPASLFL
NAGLQSGVLFRTVVDMVTGQLSDSRSRFLGLRAPKLFSIIVRDRRAMLCLSSRPWLGYIH
QGHFLLTPLSYETLEFAASFSSDQCAEGVVAVAGDALRIFTIERLGETFNETAIPLRYTP
RKFVVLPKKKLLVVIESDQGAYAAEEREAAKKECFEAAGMGENGSANADQMENGGDDEDK
DDPLSDEQYGYPKAESEKWVSCIRVLDPRTASTTCLLELQDNEAAFSVCTVNFHDKEHGT
LLAVGTAKGLQFWPKRSLVAGFIHIYKFVDDGRTLELLHKTQVEGVPLALCQFQGRLLAG
IGPVLRLYDLGKKRLLRKCENKLFPNTIVSIHTYRDRIYVGDIQESFHFCKYRRDENQLY
IFADDCVPRWLTATSHIDFDTVAGADKFGNIYFVRLPQDVSDEIEEDPTGGKIKWEQGKL
NGAPNKVEEIVQFHVGDVITSLHKASLIPGGGECIIYGTVMGSLGALLPFTSRDDVDFFS
HLEMHLRQDHPPLCGRDHMAFRSAYFPVKDVIDGDLCEQFPTLPLDAQRKIADELDRTPG
EILKKLEEIRNKII
NT seq
3645 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagtcttacgcttcaacgagcgaccggcatcatctccgcgatcaacggc
agtttctccggtggcaagacccaagaaattgtagtagctcgcggaaaagtccttgatctt
ctccgccctgacgagaatggtaagcttcagactcttctttctgttgaaatattcggtgct
attcgctctctagctcagttcagactaactggatctcaaaaggattatatagctgttggg
tctgattcgggaagaatcgtaattcttgaatataacaaggagagaaatgtttttgacaaa
atacaccaggaaacttttgggaaatctggttgccgccggattgttccagggcaatacttg
gccattgacccaaaaggaagagctgttatgataggtgcctgtgagaaacagaagttagtt
tatgttttgaatagagatactgctgctaggttgactatatcgtcaccgttagaagcacat
aagtctcacacaatagtatattcaatttgcggtgttgattgtgggtttgataacccaata
tttgctgctattgagttggattattcagaggcagaccaggattcaacagggcaggctgcc
agtgaggcacagaaacatttgacgttttatgagcttgatttagggcttaatcacgtgtct
aggaagtggtctgagcaggtggataatggggcaaatatgctcgttacagtgcctgggggt
ggtgatggaccaagtggagttttggtttgcgcagagaattttgtaatttataagaatgag
gggcatccagatgtgagagcagtgattccaaggcgagcagatttacctgctgagagaggg
gttttggtagtttctgcagctactcataagcagaagtccatgtttttctttcttttgcag
acagagtatggtgatatcttcaaggttacattggatcatgagaatgataaggtaaaggag
ttgaaaattaagtattttgatacaattcctgttactgcttctatgtgtgtgttgaaatca
gggtttttgtttgctgcatcagagtttgggaatcatgcattatatcagtttcaggcgatt
ggggaggaggctgatgtggaagcctcatcagctactttaatggaaactgaggaaggtttc
cagcctgtgtttttccagccaagaggtttgaagaatcttgttagaattgaccaggttgag
agcttgatgcctattatggatatgaaggtttttaatctttttgatgaggaaacacctcaa
atattttcactttgtggacgtggtcctcggtcttcattgaggatattgaggccaggttta
gccattagcgagatggctgtttcacagcttccaggtgtaccaagtgcagtctggactgtg
aaaaagaatgttaacgatgaatttgatgcatacattgttgtgtctttcaacaatgccaca
ctagtactttcaattggagaaacagttgaggaagtcagtgacagtgggtttcttgatact
acaccttcccttgctgtttctttgattggtgatgattctttgatgcaagttcacccaaat
ggcatcaggcatataagggaagatgggcgtataaatgaatggaggactcctggaaagaga
acaattgtaaaggttggctccaatagacttcaagtggttattgctttaagtggaggggag
cttatatattttgaggttgatgttactggtcagctaatggaggtggagaagcatgagatg
tctggagatgtggcctgtttggatattgcacctgttccagaaggaagacagagatcccga
ttccttgcagttggttcatatgacaataccattcgtatcttgtccttggatcctgatgac
tgtatgcaaattttgagtgttcaaagtgtctcatcacctccagaatccctcctctttctc
gaggttcaggcatcagtaggtggagaggatggtgctgatcaccctgctagccttttcctt
aatgctggtttgcagtctggggttctattcaggacagtggtagacatggtgacaggccag
ctttctgattctcgttcccggttcttgggcttgagggcaccaaaactcttctccattatt
gtgagagaccggcgtgcaatgttgtgcttatcaagtcgaccctggcttggttatattcac
caagggcatttccttttaacacccctttcatacgagactcttgaatttgctgcttcattc
tcatctgatcagtgtgcagaaggtgtggtagctgtagctggggatgccttgaggattttt
accattgaaaggttgggagaaacatttaatgaaactgcaatacctctaaggtacactcca
agaaagtttgtggttctacctaagaagaagcttttggtagttattgagagtgatcaagga
gcatatgcagcagaggagcgtgaagctgccaaaaaggagtgttttgaggctgctgggatg
ggggaaaatggaagtgcaaatgctgatcagatggagaatggtggtgatgatgaagacaaa
gatgatccactttctgatgagcagtatggttatccaaaggcagaatcagaaaagtgggtt
tcttgcatcagggttctagacccaaggacagcatccacaacttgtctgctggagcttcag
gacaatgaagctgcatttagtgtgtgcacagttaacttccatgacaaggagcatggaact
cttttagccgtcggtactgccaagggactccagttttggcccaaaagaagtttagttgct
gggttcattcacatctataagtttgtggatgatggcagaaccctggaacttttgcacaag
acacaagtggaaggtgtaccacttgccttatgccagtttcagggaagactgctcgctggg
ataggacctgtgctcagactgtatgacctagggaagaagaggttgcttaggaaatgtgag
aataagctgttccctaacactattgtctctattcacacctaccgcgataggatatatgtg
ggtgatattcaagagtcgttccatttctgcaagtataggcgagatgaaaatcagctctat
atatttgcagatgattgtgttccaagatggcttactgcaacatcgcacatagattttgat
actgtggcaggtgccgacaagtttggaaacatctattttgtgcggttgccccaggatgtt
tctgatgagatagaagaagacccaactggtggaaagataaaatgggaacaggggaagctt
aatggagctccgaacaaggtagaggagatagtacagtttcatgttggtgatgtcattact
agcctgcataaggcatccttaattccaggtggtggagagtgcatcatatacgggacagtg
atggggagcttgggggctctgcttccattcacctctcgcgatgatgttgacttcttttct
cacttggagatgcatttgaggcaggaccacccaccattatgtggaagagaccatatggca
tttagatctgcttattttccagttaaggatgtgatcgatggggatctatgtgagcagttc
ccaacacttccacttgatgcgcagagaaaaattgctgatgaattggatagaacacctggg
gagatactgaagaaactagaagaaattcgaaataagatcatctaa
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