Methylobacter sp. S3L5C: KKZ03_15860
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Entry
KKZ03_15860 CDS
T08037
Name
(GenBank) DEAD/DEAH box helicase
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
mesl
Methylobacter sp. S3L5C
Pathway
mesl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mesl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
KKZ03_15860
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mesl03019
]
KKZ03_15860
03009 Ribosome biogenesis [BR:
mesl03009
]
KKZ03_15860
Enzymes [BR:
mesl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
KKZ03_15860
Messenger RNA biogenesis [BR:
mesl03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
KKZ03_15860
Ribosome biogenesis [BR:
mesl03009
]
Prokaryotic type
rRNA helicases
KKZ03_15860
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
DbpA
ResIII
AAA_19
CMS1
SUa-2TM
Motif
Other DBs
NCBI-ProteinID:
UOA07716
LinkDB
All DBs
Position
complement(3536528..3538336)
Genome browser
AA seq
602 aa
AA seq
DB search
MSNDVSTLPTFRDLALIEPLLKALDDVGYETPSPIQAQVIPLMLQGRDVLGQAQTGTGKT
AAFALPILSRIDLRQKDPQVLVLAPTRELAIQVAEAFQRYAAHLKGFHVLPIYGGQDYST
QLRQLKRGAHVVVGTPGRVMDHMRKGTLNLDGLSVLVLDEADEMLRMGFIDDVEWVLEKT
PENIQIALFSATMPSVIRKIAQEYLTDPEQVTIKVTTASAENIRQRFWMVSGVHKLDALT
RILEAETFDGMIIFVRTKTATIELAEKLEARGYSAAAINGDMSQTLRERTIAHLKNGKLD
ILIATDVAARGLDVDRITHVVNYDIPYDTESYVHRIGRTGRAGRTGDAILFIAPRERKLL
GNIERATKQKIEEMGLPSTEVINNKRISRFKQNITDTLAAEELSFFTQLIEQFQQEHNVT
ALEIAAALAKLVQGDTPLLMQNLPKKAYDSREDRPERDRPSRDRDDRSRREDRPERDRKP
KRAFGTGANIEMETFRIEVGHAHGVKPGNIVGAIANETGIDGDHIARIRIEDDYSTVELP
AGMPKELLEELKRIRVAGQLLNISKMDESARRSQPDDAAKKVDKSKKRMGSTSRRAKPKA
EE
NT seq
1809 nt
NT seq
+upstream
nt +downstream
nt
atgtccaatgatgtttctacattacccactttccgtgatttagcactgatcgaacctctg
ctaaaagcactggatgatgtcggttatgaaacaccttcgcccattcaggcacaagttatt
ccgctaatgttacaaggcagagatgttttgggtcaagcgcaaacaggtactggtaaaaca
gcggcttttgcactacccattttatcgcgtatagatcttcgtcaaaaagacccacaggtg
ttggttctggctccgactcgcgaacttgccatacaagtagcagaagcatttcagcgttat
gctgcacatttaaaaggcttccatgttttacctatttacggtggacaagactacagcaca
caattacgtcagctaaagcgcggcgcacacgtggttgtcggtacaccgggtcgggtcatg
gatcacatgcgtaaaggcaccttgaatctggacggccttagcgttctggttcttgatgaa
gctgatgaaatgttacgtatgggctttattgatgatgttgaatgggtacttgaaaaaaca
ccggaaaatatacaaatagctttattttctgcgactatgccttcggttattcgtaaaatt
gctcaagaatatttgactgatccggagcaagtcactattaaagtaactactgcatcagca
gaaaatatacgtcaacgcttttggatggttagtggcgtacataagttggacgcattgact
cgtatccttgaagctgaaacgtttgacggcatgattattttcgtcagaaccaaaacggca
accattgaattggcagaaaagctggaagcacgaggctactcggcagcggcaattaatggc
gacatgtctcagactcttagagaacgcactattgcccatctgaaaaatggcaaattggat
attttaattgctaccgatgttgctgcgcgcggattggatgtcgatcgtattacccatgtc
gtcaactacgatatcccttacgataccgaatcttacgttcatcgtattggcagaacagga
cgtgcgggacgtaccggtgatgcaattttgtttattgcacccagagaaagaaagttgttg
ggtaatatcgaaagagcgaccaagcaaaaaattgaagaaatgggtttaccttcaactgaa
gtcattaataataaacgtatttcacgcttcaaacaaaatattactgacacgttggccgca
gaagagttgagttttttcactcaattgatagagcaatttcaacaggaacataatgtaacc
gcattagaaatagcggctgccctggcaaaattggtccaaggcgatacaccgttgttaatg
caaaatttacctaaaaaagcttacgacagtagagaagatcgtcctgaaagggatcgtcct
tcaagggacagagatgaccgttcacgtagggaggatcgtcctgaaagggatcgtaaacca
aaacgtgctttcggaactggcgcaaatatagaaatggaaacatttcgtattgaagtcggc
catgcacatggcgtaaaacctggcaatattgttggtgctattgccaatgaaaccggcatt
gatggcgatcatatcgcccgtattagaattgaagatgactacagtactgttgaattacct
gcaggtatgccaaaagaattgcttgaagaactgaaaagaattcgggtcgcaggacagttg
cttaacatttcaaaaatggatgaaagtgccagaagatcacaaccggatgatgcggccaaa
aaagttgataaaagcaaaaaaagaatgggttctacatccagacgtgcaaaaccaaaagca
gaagagtaa
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