Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2: EJ066_07515
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Entry
EJ066_07515 CDS
T05904
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mesm
Mesorhizobium sp. M9A.F.Ca.ET.002.03.1.2
Pathway
mesm03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mesm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
EJ066_07515 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesm03400
]
EJ066_07515 (ligD)
Enzymes [BR:
mesm01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
EJ066_07515 (ligD)
DNA repair and recombination proteins [BR:
mesm03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
EJ066_07515 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AZN97147
UniProt:
A0A3Q8XU99
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All DBs
Position
1495556..1498075
Genome browser
AA seq
839 aa
AA seq
DB search
MASLEQYHAKRDFKKTDEPVGKVSRGKKGHAGGIFVIHKHAATRLHYDLRLEHGGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGIIPKGEYGGGSVIVWDEGTWTPATDPAKA
MKKGHISFELNGHKLHGLWHLVRLKPRPREKRDNWLLIKSDDAAARPGEDILQEAPESVK
SGLTIEEVGEGKTADGKKAKVWHSNRPAAGKAKARTGKRLEFIEPCLATLQRDAPPGKEW
LHEVKFDGYRMQAQLAGTEVRLLTRTGLDWTEKFGGEIVAELRRLKCTDAIIDGEIVVLA
DSGVSSFALLQADLSAGRTDRFLYYVFDLMRLDGEDLRTEPLVERKQALQDLLGKQPGNP
AVRFSDHFAEPGKVMLEHACRMGLEGLVSKRADAPYRSGRGLSWVKSKCTLRQEFVIGGY
MPSDKTGRGLRSLLVGYYEGGKLRYAGRVGTGFTTKSTNELKKKLDALKAKTSPFDRAVP
RGKGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEEVMQEKPKAPAGKAKPAD
GKGEKSTSVKSMGVAKTDVKLSNHDKLLWPQEKISKQDLLDHYALVWPRMKQFVVNRPLS
LVRAPDGIGGQRFFQKHASAGMHYKIAMMKDPTDGEEILFVRDFDGIAALVQLGVVEIHI
WGCTADELEKPDQIIFDLDPDEGVDVKAVRAAALEIRGQLDELSLPNFVKTSGGKGYHVV
VPLKPSADWDEVKGFAHDFARALEQAAPERYTATLSKKARTGKIFVDYLRNGRGSTTVAP
YSSRAKKGATVSMPVTWAEIEGGLAPNAFPIGDRTTLKRLAEADPWKDFFKQGKPLKHG
NT seq
2520 nt
NT seq
+upstream
nt +downstream
nt
atggccagtctcgaacaatatcacgcaaagcgagatttcaagaagaccgacgagccggtt
ggcaaggtttcacgtggcaagaagggccatgccggcggcatcttcgtcatccacaagcat
gccgccacaaggctgcattatgacctccgccttgagcatggcggcgtgctctggagctgg
gcggtgacgcgaggtcctagcctcgacccgcacgagaagcggcttgccgtccacgtcgag
gaccatccgatcgactatgctccgttcgaaggcatcattcccaagggcgaatatggcggc
ggctcggtcatcgtctgggacgaggggacatggacaccggcgaccgatccggccaaggcg
atgaagaaaggccatatcagcttcgagctcaacggccacaaattgcacggcctttggcat
ctagtccggctgaagccgcgtccccgcgaaaagcgcgacaactggctgctgatcaagtcc
gacgatgctgccgcccggcccggcgaggatatattgcaggaagcgccggaatcggtgaag
tccggcctgacgatcgaggaggtcggcgaaggtaagaccgccgatggcaagaaggcgaag
gtctggcattccaacagaccggccgccggcaaggcgaaggccaggacggggaaacggctt
gaattcatcgaaccgtgtctcgccaccctgcagagagatgcccctcccggcaaggaatgg
ctgcacgaggtgaagttcgacggctatcgcatgcaggcgcagcttgccggcaccgaagtg
cggctgttgacgcgcaccggtctcgactggaccgagaaattcggcggcgagattgttgca
gagctcaggcgtctgaaatgcaccgatgccatcatcgacggtgagatcgtcgtgctggcg
gatagcggcgtctcgtccttcgcactgctgcaggctgacctgtcggcgggccgaacggac
cgttttctctattacgtctttgacctgatgcgactcgacggcgaagacctgcgcacagag
ccgctggtcgagcgcaagcaggctttgcaggacttgcttggcaaacagccgggcaacccg
gcagtccgcttcagcgaccattttgccgaacccggcaaggtcatgctggagcacgcctgc
cgcatggggctggaaggcctcgtctccaagcgcgccgacgcgccctatcgcagcggccgc
ggcttgtcttgggtgaagtcgaaatgcacgctgcgccaggaattcgtcattggcggctat
atgccgtcggacaaaaccgggcgtgggctgcgctcgctgctggtcggctattacgagggc
ggcaagctgcgttatgccggccgcgtcggaaccgggttcacgaccaagagcaccaacgag
ctgaagaaaaagctcgatgcgctgaaggcgaaaacctcgcccttcgacagggcggtgccg
aggggcaaggggctggtctgggtgaagcccgaacttgtcggcgaggtggagttccgcagc
tggacgtccgaccgtataatacgtcacgcctcgttccagggattgcgcgaggacaagccg
gcggaggaggtcatgcaggaaaagccgaaggcacccgcaggcaaggcaaagcctgccgac
ggcaagggggagaaatccacctctgtcaaatccatgggcgtggcaaaaaccgacgtaaag
ctctccaaccacgacaagcttctgtggcctcaggagaagatatcgaagcaggatctgctc
gatcactatgcgctcgtctggccacgcatgaagcagttcgtcgtcaaccggccgctcagc
cttgtgcgggcgccggacggcatcggcggccagcgcttcttccagaagcatgcctcggca
ggcatgcattacaaaatcgccatgatgaaagatccgaccgacggcgaggagattttgttc
gttcgcgatttcgacggcatcgctgcgttggtgcagctcggtgtggtcgagatccacatc
tggggctgcaccgcagacgaactggagaaacccgaccagatcatcttcgatctcgatccc
gatgagggtgtcgatgtgaaagcggtgcgcgcggcggcgctcgaaattcgcggccagctc
gatgagctgtccttgccgaatttcgtcaagacgtcaggcggcaagggctatcatgtcgtc
gtgccgctgaagccgtcggcggattgggatgaggtgaaaggcttcgcccatgatttcgcc
cgtgccctcgaacaggcggcacccgagcgctacactgcgacgctgtcgaagaaagcgcgc
accggcaagattttcgtcgactatctgcgcaatggccgcggctcgaccacggtcgcgccg
tactcgtcacgggccaagaagggcgcgaccgtctcgatgccggtgacctgggcggagatc
gagggcgggctggcgccgaacgcctttccgatcggcgacaggacgacgctgaagcgcctg
gccgaggccgatccttggaaagacttcttcaagcaaggcaagccgctcaagcacggctag
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