Mesorhizobium sp. 8: FGU64_08215
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Entry
FGU64_08215 CDS
T07809
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mesr
Mesorhizobium sp. 8
Pathway
mesr03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mesr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FGU64_08215 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesr03400
]
FGU64_08215 (ligD)
Enzymes [BR:
mesr01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FGU64_08215 (ligD)
DNA repair and recombination proteins [BR:
mesr03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FGU64_08215 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
QDC00400
UniProt:
A0A5B8B328
LinkDB
All DBs
Position
complement(1692934..1695471)
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AA seq
845 aa
AA seq
DB search
MAEQALEKYRAKRDFSKTAEPAGKAPRRQAKAGEGGIFVIHKHAATRLHYDLRLEHGGVL
WSWAVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTISKGEYGGGSVIVWDEGTWVPEHDP
AAGMKKGHIDFELQGEKLSGKWHLVRLKPRAGEKKDNWLLIKSDDAAARPGEDILKERPE
SVKSGLTVEEVGEGRAAKGKKPQVWHSNKPAAGKAAREAASRLQFVEPALATLERDAPSG
KEWLHEVKFDGYRMQAAIAGTEIRLLTRKGLDWTERFGGEIPAALARLKCADAIIDGEIV
VLGGDGVSSFSLLQADLSADRTDRMIYYVFDFLRLDGEDLRDEPLVERKERLRELLELLG
DDGPVRFSDHFVEPGKVMLKHACRMGLEGVVSKRADAPYRSGRTGVWIKSKCTQRQEFVI
GGYLPSEKTGRGLRSLLVGYHEGDRLRYAGRVGTGFSAKAGDDLKKKLDALKAKKSPFDA
KVPGGKGLVWVEPELVAEVEFRSWTADRIIRHASFQGLREDKPAEEVVQEEPKAVSGKDK
AGQGASTARDAAPRGKGKSVVKTGIKLTHPDKLLWPEEKVSKQALLEHYDLVWPRMEPFV
VNRPLALVRAPDGVGGPRFFQKHASAGMSEKIFKSKDPEDNEEILYVKDFDGIAALVQMG
VVEIHVWGCTVDKIDTPDQIVFDLDPDEGVAVDRVRQAALDIRDKLKELSLPVFVKTSGG
KGYHVMVPLKPKAKWDAVKGFAHDFARAMEQAEPDRYTATLSKKARTGRIFIDYLRNGRG
STTVAPYSSRAKKGATVSMPVTWTEIEDGLPPNAFPIGDKTTLKRLAGDDPWKGFFAAGK
PLKLG
NT seq
2538 nt
NT seq
+upstream
nt +downstream
nt
atggccgagcaagccctggaaaaatatcgcgccaagcgcgatttctcgaagaccgccgaa
ccggccggcaaggcgccgcgccgccaggcaaaggcgggcgagggcggcatcttcgtcatc
cacaagcatgccgcgacgcgcctgcattacgacctgcgcctcgagcacggcggcgtactg
tggagctgggcggtcacgcgcggccccagtctcgacccgcacgagaagcggctggcggtc
catgtcgaggatcatccgatcgactatgcgcccttcgagggcacgatctcgaaaggcgag
tatggcggcggctcggtgatcgtctgggacgagggcacctgggtgcccgagcacgatccg
gccgccggcatgaagaaaggccatatcgacttcgaactgcaaggcgagaagctttccggc
aagtggcatctggtgcgcctgaagccgcgtgcgggcgagaagaaggacaactggctgctg
atcaagtccgacgacgcggcggcgcggcccggcgaggatatcctgaaggagcggccggaa
tcggtgaagtccggccttaccgtcgaggaggtgggcgagggcagggcagccaagggaaag
aagccgcaggtctggcattccaacaagccggcggcgggcaaggcggcgcgagaagcggca
tcgcggctgcaatttgtcgagcctgcgctggcgacgctggagcgcgacgccccgtcgggc
aaggaatggctgcacgaggtgaagttcgacggctatcggatgcaggctgcaatcgccggc
accgaaatccgcctgctcacacgtaaaggactggactggaccgaacgcttcggcggtgaa
atccctgcggctcttgcccgtctcaaatgcgcggacgccataatcgacggcgagatcgtc
gttcttggcggtgatggcgtctcgtcgttttcgctgttgcaggccgacctgtcggccgac
cggacggaccgcatgatctactacgtcttcgacttcttgcggctggacggcgaggacctg
cgcgacgagccactggtcgagcgcaaggagcgcttgcgtgagttgctggagctgctgggc
gacgacggcccggtgcggttttccgaccatttcgtcgagccgggcaaggtcatgctgaag
catgcctgccgcatggggctggaaggcgtcgtctccaagcgcgccgacgcgccgtaccgc
tccggtcgcaccggcgtctggatcaagtcgaaatgcacccaacgccaggaattcgtcatc
ggcggctatctgccttccgaaaagaccgggcgcggcctgcgctcgctgctcgtgggctat
cacgagggcgaccggctgcgctatgccggccgcgtcggcaccgggttttcggccaaggcc
ggcgacgatctcaagaagaagctcgacgcgctgaaggcgaaaaaatcgcccttcgacgcc
aaggtgccgggcggcaaggggctggtctgggtcgaacccgagcttgtcgcggaagtggag
ttccgttcctggacggccgatcgtatcatccgccacgcctcgttccagggactgcgcgag
gacaagccggccgaagaggtcgtgcaggaagagccgaaggcggtctccggcaaggataag
gccgggcagggcgcttcaaccgccagggacgcggctccgagagggaaggggaaatccgtc
gtgaagacagggataaagcttacccaccccgacaagctcctgtggcccgaggagaaggtg
tcgaagcaggccctgcttgaacactacgaccttgtctggccgcgcatggagcctttcgtc
gtcaaccggccgctggcgctggtgcgcgcgccagacggcgtcggcggcccgcgcttcttc
cagaagcacgcctcggccggcatgagcgaaaaaatcttcaagtcgaaggaccccgaagac
aatgaggaaatcctctatgtgaaggatttcgacggcatcgcggcgctggtgcagatgggc
gtggtggaaatccatgtctggggctgcaccgtggacaagatcgacacgcccgaccagatc
gtcttcgacctcgatcccgacgagggcgttgcggtcgatagggtgcggcaggcggcgctc
gatatccgggacaagctgaaggaactgtcgctgccggtcttcgtcaagacatcgggcggc
aagggctatcatgtgatggtgccgctgaagccgaaggccaaatgggatgcggtgaagggt
ttcgcccatgatttcgcccgcgccatggagcaggccgagccggaccgctatacggcgacg
ctgtcgaagaaggcgcgcacggggcgtatcttcatcgactacctgcgcaacggccgtggc
tcgaccacggtcgcgccctattcctcgcgcgctaagaagggcgcgaccgtttccatgccg
gtgacatggacggaaatcgaggacggcctgccgcccaacgcctttccgatcggcgacaag
acgacgctgaagcgcctggcgggcgacgatccgtggaaaggtttctttgcggccggcaaa
ccgctgaagctggggtga
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