Mesorhizobium sp. WSM1497: A9K65_004035
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Entry
A9K65_004035 CDS
T04915
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mesw
Mesorhizobium sp. WSM1497
Pathway
mesw03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mesw00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
A9K65_004035
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mesw03400
]
A9K65_004035
Enzymes [BR:
mesw01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
A9K65_004035
DNA repair and recombination proteins [BR:
mesw03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
A9K65_004035
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
ARP62645
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All DBs
Position
835761..838274
Genome browser
AA seq
837 aa
AA seq
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MASLEQYHSKRDFKKTAEPAGKVARTKQGGAGGIFVIHKHAATRLHYDLRLEHDGVLWSW
AVTRGPSLDPHEKRLAVHVEDHPIDYAPFEGTIPKGEYGGGSVIVWDEGTWIPEIDPAKA
MKKGHISFELRGHKLHGAWHLVRLKPRAGEKRDNWLLIKSDDAAARPGEDILKEAPESVK
SGLTIEEVGEGKTAKGEKPKVWHSNKPAAVKTKAGKRLDFIEPQLATLERDAPPGKDWLH
EVKFDGYRMQAQIAGTDVRLLTRTGLDWTKKFGGEIVAELAGLKCSDAILDGEVVVLADS
GVSSFALLQQDLSAKRTNRFIYYVFDLMRLDGQDLRREPLVERKQALQELLGEQSDNAAV
RFSDHFAEPGKIMLEHACRMGLEGVVSKRADAPYRSGRGPTWVKSKCTARQEFVIGGYLP
SDKTGRGLRSILVGFHEGGKLHYAGRVGTGFSGKGANELKAKLDALTAKSSPFSTAVPKG
KGLVWVKPELVGEVEFRSWTSDRIIRHASFQGLREDKPAEEVVQEKPKAATGKPSTGKST
AKPASGGKAAGSMTTTVKLSHPDKLLWPDENISKQGLLDHYAQVWPRMEQFVVNRPLSLV
RAPDGVGGQRFFQKHASAGMSDKIARMKDPTDGEEILFIRDFDGVAALVQYGVVEIHIWG
CTIDEIEKPDQIIFDLDPDEGVDVKAVREAALDIRGKLDELSLPNFVKTSGGKGYHVLVP
LKPCAEWDAVKGFAHDFARALEQGAPDRYTATLSKKARTGKIFVDYLRNGRGSTTVAPYS
SRAKKGATVSMPVTWPEIEAGLPPNAFPIGDKTTLKQLAKADPWREFFKQGKALKRG
NT seq
2514 nt
NT seq
+upstream
nt +downstream
nt
atggccagcctcgaacaatatcattccaagcgcgatttcaagaaaaccgccgaaccggcc
ggcaaggtcgcccggaccaagcagggcggcgcgggcggcatcttcgtcatccacaagcat
gccgcgacgcggttgcattacgacttgcggctcgagcatgatggcgtgctgtggagttgg
gcggtgacgcgcggcccgagcctcgacccgcatgagaagcgactggctgtccatgtcgag
gatcacccgatcgactatgcgccgttcgaaggcaccattcccaagggcgaatatggcggc
ggttcggttatcgtttgggacgagggcacctggattcccgagatcgacccggccaaggcg
atgaaaaagggccatatcagcttcgagctcaggggacacaagctgcatggggcatggcat
ctggtgcggctgaagccgcgtgcgggtgaaaagcgcgacaactggctgctgatcaagtcg
gacgatgccgcagcgcgtcccggcgaggacatcctcaaggaagcgcctgaatcggtgaag
tccggcctgacgatcgaggaggtcggcgagggcaagaccgcgaagggcgagaagccgaaa
gtctggcattccaacaagccggccgccgtcaagacaaaagccggcaaacgcctcgacttt
atcgagccgcagctggccacgctcgagcgcgatgcgccgccgggcaaggactggctgcac
gaagtgaagttcgacggctatcgcatgcaggcgcagatcgccggcaccgatgtgcggctg
ctgacccgcaccggcctcgactggacgaagaaattcggcggcgagatcgtcgcggagttg
gccgggctgaagtgcagcgatgccatcctcgatggcgaggtggtggtgttggccgacagc
ggcgtctcgtctttcgcgctgctgcagcaggacctgtcggcgaagcggaccaatcgcttc
atctattacgtgttcgacctgatgcggctcgatgggcaggatcttcggcgcgagccgctg
gtcgagcgtaagcaggccttgcaggaactgctcggcgaacagtccgacaatgcggcggtc
cgcttcagcgaccatttcgccgaacccggcaagatcatgctggagcatgcctgccgcatg
ggcctggaaggcgtcgtctccaagcgtgccgatgcaccctaccgcagcggccgcggcccg
acctgggtcaaatcgaaatgcacggcgcggcaggaattcgtcatcggcggctacctgccg
tcggacaagaccgggcgcggactgcgctcgatcctggtcggcttccacgagggcggcaag
ctgcattatgccggccgcgtcggcactggtttttcgggcaagggcgccaatgagctgaag
gcaaaactcgatgcgttgacggcaaaatcatcgcccttctccaccgccgtgccgaagggc
aagggcctggtctgggtcaagcctgaacttgtcggcgaagtggagtttcgcagctggacc
tcggaccgtataatacgccacgcctcgttccaggggttgcgcgaggacaagccggcggag
gaagtcgtgcaggaaaagcccaaagcggcgacaggcaagccatcgacaggcaagagcacg
gccaagccggcatcaggcggcaaagccgccgggtcgatgacgaccacggtcaaactctcg
catcccgacaagctgctgtggccggacgaaaacatatccaagcagggcctgctcgaccat
tacgcacaggtttggccgcgcatggaacagttcgtggtcaaccggccgctcagcctggtg
cgggcgccggacggtgtcggcggccagcgtttcttccagaaacatgcctcggctggcatg
agcgacaagatcgcgcgcatgaaggacccgaccgacggcgaggagatcctgttcatccgg
gatttcgatggtgttgccgcactggtccagtatggcgtggtcgagatccacatctggggg
tgcacgatcgatgagatcgaaaagcccgaccagatcatcttcgatctcgacccggatgaa
ggcgtcgacgtgaaggcggtgcgcgaggcggcgctcgatatcagaggcaagctcgacgag
ctgtcgctgccgaatttcgtcaagacctcgggcggcaagggctatcacgtgctggtgccg
ttgaagccgtgtgccgaatgggacgcggtgaagggcttcgcccatgactttgcccgcgcg
ttggagcagggtgcccccgatcgctacacggcgacgctgtcgaaaaaagcgcgcacggga
aagatcttcgtcgactatctgcgcaacggcaggggctcgacgacggtcgcgccctattcc
tcgcgcgccaagaagggcgccaccgtgtcgatgccggtgacctggccagagatcgaggcc
ggcttgccgccgaacgctttcccgatcggcgacaagacgacgctgaagcagctggcgaaa
gccgatccgtggagggaatttttcaagcaggggaaggcgttgaagcgggggtag
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