Methylobacterium sp. DM1: C0214_00030
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Entry
C0214_00030 CDS
T05461
Symbol
recQ
Name
(GenBank) DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
metd
Methylobacterium sp. DM1
Pathway
metd03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metd00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
C0214_00030 (recQ)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metd03019
]
C0214_00030 (recQ)
03400 DNA repair and recombination proteins [BR:
metd03400
]
C0214_00030 (recQ)
Enzymes [BR:
metd01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
C0214_00030 (recQ)
Messenger RNA biogenesis [BR:
metd03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
C0214_00030 (recQ)
DNA repair and recombination proteins [BR:
metd03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
C0214_00030 (recQ)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
HRDC
Helicase_C
RecQ_Zn_bind
ResIII
Motif
Other DBs
NCBI-ProteinID:
AWI86898
LinkDB
All DBs
Position
5097..6944
Genome browser
AA seq
615 aa
AA seq
DB search
MSQRLDEARAALKKTFGYDDFRPGQDEVIGAVLDGADVFAVMPTGSGKSMTYQLPALVDA
GLTVVVSPLIALMHDQVQQMHAFGIEAATLNSTVAEVTSRETWRKIRSGELRLLFVSPER
LLMDGCMEALRGAGVRRLAVDEAHCVSQWGHDFRPEYREIARAREALGNVQTLALTATAD
AATRAEIAERLFPAGRSPRTFVHSFDRPNIRLTFQPKDNPTRQLERFLRDRRAESGIIYC
SSRKRVEQLADTLKADGFNALPYHAGLDQGTRARNQDTFLQEDGVVMTATIAFGMGINKP
DVRYVCHADMPTNIEGYYQEIGRAGRDGLPSDTLTLYGLDDMALRRRQIDEKEISEERRR
VERRKLEAMIALCEGAACRRQSLLGYFGEASERCGRCDLCRSGVSLIDGTVAAQKLLSAI
VRTGQRFGAAYVCDVVHGKESEPIRRNGHAALKTFGVGNDKPVAAWRALLRQLFAAGAVA
ENTDGYGGLVMTERGEAILFGRERIEVRPDPEPKKAEPKSRRPAARDDDANALSEADEAL
FQHLRGLRATIARAEGIAAFMVFPDRTLIEMARSKPIDLWALRTVHGVGERKREAYGERF
TDAIREFLDDAKKAG
NT seq
1848 nt
NT seq
+upstream
nt +downstream
nt
atgtcccaacgcctcgacgaggcccgtgccgcgctgaaaaaaacctttggctacgacgac
ttccgtcccggtcaggacgaggtgatcggcgccgtgctcgacggcgcggacgtgttcgcg
gtgatgccgacgggctcgggcaagtcgatgacctaccagctaccggcgttggtcgatgcg
gggctcaccgtggtggtctcgcccctgatcgcgctgatgcacgatcaggtgcagcagatg
cacgccttcggcatcgaggccgcgaccctgaactcgacggtggctgaggtgacctcgcgg
gagacgtggcgcaagatccgttccggcgaactgcggcttcttttcgtctcgcccgaacgc
ctgctgatggacggttgcatggaggccctgcgtggggccggcgtgcggcggctcgcggtg
gacgaggcgcactgcgtctcgcaatggggccacgacttccgacccgaatatcgcgagatc
gcccgcgcccgcgaggcgctcggcaacgtccagaccctggcgctgaccgccaccgccgac
gcggcgacccgagccgagatcgccgagcggctctttcccgccggccgttcacccaggacc
ttcgtccactccttcgatcggccgaacatccggctgaccttccagccgaaggacaacccg
acccgccagttggagcgcttcctacgcgaccggcgggcggagagcggcatcatctactgc
tcgtcgcgcaagcgcgtggagcaactcgccgataccctgaaggcggacggattcaacgcc
ctgccctaccatgccgggctcgaccagggcacgcgggcgcgcaatcaggacaccttcctg
caggaggacggcgtggtgatgaccgccacgatcgccttcggcatgggcatcaacaagccg
gatgtgcgctacgtctgtcacgccgacatgccgaccaacatcgagggctactatcaggag
atcggtcgcgccggccgcgacgggctgccctccgacaccctgaccctctacggcctcgac
gacatggcgctgcgccgccgccagatcgatgagaaggagatctcggaggagcgccgccgg
gtcgagcggcgcaagctcgaggcgatgatcgcgctgtgcgagggcgccgcctgccgccgt
caatcgctgctcggctatttcggcgaggcgagcgagcgctgcggccgctgcgatctctgc
cgcagcggcgtctcgctcatcgacggcaccgtggcggcgcagaagctgctctcggcgatc
gtgcgcaccggtcagcgcttcggcgcggcctatgtctgcgacgtcgtccacgggaaggag
agcgagccgatccgccgcaacggccacgccgcgctgaagaccttcggcgtcggcaacgac
aagccggtggccgcgtggcgcgcgcttctgcgccagcttttcgcggccggggcggtcgcc
gagaacaccgacggctatggcggcctcgtcatgaccgagaggggcgaggcgatcctgttc
ggacgcgagaggatcgaggtccggcccgaccctgaaccgaagaaggccgagccgaagagc
cgccggcctgcagcccgcgacgacgacgccaatgcgctgagtgaggcggacgaggcgctg
ttccagcatctgcggggcctgcgcgccaccatcgcccgggcggaaggcatcgccgccttc
atggtgtttcccgatcgtaccctgatcgagatggcgcgctcgaagcccatcgatctctgg
gcgctgcgcacggtccacggcgtcggcgagcgcaagcgcgaggcctacggtgagcggttc
accgacgcgatccgcgagttcctcgacgacgccaagaaggccggctga
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