Methyloligella sp. GL2: HT051_09530
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Entry
HT051_09530 CDS
T06641
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
metg
Methyloligella sp. GL2
Pathway
metg03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
metg00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
HT051_09530 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metg03400
]
HT051_09530 (mfd)
Enzymes [BR:
metg01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
HT051_09530 (mfd)
DNA repair and recombination proteins [BR:
metg03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
HT051_09530 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
Helicase_C
UvrB_inter
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
RecG_dom3_C
SecA_DEAD
Motif
Other DBs
NCBI-ProteinID:
QKP78804
UniProt:
A0A6N0DXK0
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All DBs
Position
complement(2007466..2010891)
Genome browser
AA seq
1141 aa
AA seq
DB search
MLLGALAAAAGTAGKPLLHIARDGQRLAGLQAAISFFAPDVEQLVFPAWDCVPYDRVAPN
GAFVAERISSLSALAKREAGNKPLIVLTTVNAAMQRVPPKDFVSASVQHLKPGQVVKMAE
LVEGLEMSGYARASTVTDPGQYAVRGGIVDLFPPGGQTARLDFFGDQLETVKCFDPETQR
STATLEELTLRPMSELALTPETRRAFRQRYIELFGPVTSEDPLYEAISAGHQHQGMEHWL
PLFHDRLETLFDYLPDAAVSLDPLDEDAKEKRLEQIQDHYEAREQALERKAFGAAPYNPV
PPESLYLTGADWDAALSDRSVVRISPFEQPDGAEGAEVISFGGRHGRSFAAERKAEGGNV
FDAVVSHIKLLRQGKKRALIACWTPGARERLSTLLQEHGLSETRSIDSFAEIAAIPRDIA
AFGVLPLETGFEAPGLAVIGEQDILGDRLVRRSRPKKGSDVLTEASSLTVGDLVVHADHG
IGRFAGLNTIEAVGQPHDCLELTYSGGDKLYLPVENIDLLSRFGSEEQGVQLDKLGGVGW
QSRKAKLKKRIRDIAEKLIKVAALRELRSATPLYPPEGVYQEFSARFPYEETGDQANAIE
AVVEDLGSGKPMDRLICGDVGFGKTEVALRAALIAVLAGKQVAVVVPTTLLARQHYATFV
ERFRGLPVKIAQASRLVSTKELNETKKQIASGDIDIVVGTHALLGKSIEFGDLGLLIIDE
EQHFGVGHKERLKQLREDVHVLTLTATPIPRTLQLALSGVREMSIIATPPVDRLAVRTYV
TPFDPVILREALLRERYRGGQTFYVVPRISYLEEAGEFLAEHVPELKVGKAHGQMGSKEL
DQVMNAFYDRQYDVLLSTSIVESGLDIPSANTMIVHRADMFGLAALYQLRGRVGRSKIRA
YAYFTVPSDRRLTPAAEKRLKVLQSLDSLGAGFMLASHDLDLRGAGNLLGEEQSGHIREV
GYELYQSMLEEAIQAMKGGDEGEVEDQWSPRINLGTAVLIPEDYVPDLQLRLGLYRRLSS
AEDSASIEAFAAEMIDRFGPLPLEVRHLLDVVEIKRLCRQAGVEQIDAGPKGAVLAFRNK
SFANPEGLIAFIAKEGAGVKLQPDHKLVYYEDWPTPEDRLNGAREVLKQLARIAGEVKEA
A
NT seq
3426 nt
NT seq
+upstream
nt +downstream
nt
atgctgcttggcgcgctggccgccgctgcgggcaccgctggcaagccgcttctgcatatc
gcgcgcgacgggcagcgcctggccggcctgcaggcggcgatctcgttcttcgcccccgat
gtggagcagctggtctttcccgcctgggattgcgtgccctatgaccgcgtggcacccaac
ggcgccttcgtcgccgagcgcatttccagcttgagcgctctggccaagcgcgaggccggc
aataagccgctgatcgtgctcaccacggtgaacgccgccatgcagcgcgtgccgccgaag
gatttcgtctccgcctcggtgcagcatttgaagcccggccaggtggtgaagatggccgag
ctggtcgaggggctggagatgtccggctatgcccgggccagcaccgtcaccgatccgggc
caatatgcggtgcgtggcggcatcgtcgatctgtttccgccgggcggccagaccgcgcgg
ctggatttcttcggcgatcagctcgagaccgtcaaatgcttcgatccggagacccagcgc
tccactgccacgctggaggagctgacgctccggcccatgagcgagctggcgctcaccccg
gagacgcggcgtgccttccgccagcgctatatcgagctgttcggtcccgtcaccagcgag
gacccgctctatgaggcgatctctgccgggcatcagcaccagggcatggaacattggcta
ccgctgttccacgaccgtctggagacgctgttcgactatctgcccgacgccgcggtgagc
ctcgatccgctggacgaggacgccaaggagaagcgtctggagcagatccaggaccattac
gaggcccgcgagcaggcgctggagcgcaaggctttcggcgcggcgccctataatccggtg
ccgccggagagcctctatttgaccggcgccgattgggatgcggcactgtcggaccgcagc
gtggtgcgcatctcgcccttcgagcagcccgacggcgcggagggcgccgaggtgatctcc
ttcggcggccgccatggccgctccttcgccgccgagcgaaaggccgaaggcggcaacgtc
ttcgatgccgtggtcagccatatcaaattgctgcgccagggcaagaaacgggcgctgatc
gcctgctggacgccgggggcccgcgagcgcctgtcgacactgttgcaagagcacgggctc
agcgagacccgcagcatcgatagctttgccgagatcgctgccattccgcgcgacatcgcc
gccttcggcgtgctgccgcttgagaccggcttcgaggcgccgggcctcgccgttatcggc
gagcaggacatcctgggcgaccgcctggtccgccgtagccgccccaagaagggcagcgac
gttctcactgaggcttccagcctcaccgtcggcgatctcgtcgtccatgccgatcacggc
atcggccgcttcgccgggctcaacaccatcgaggcggttggccagccgcatgactgcctg
gagctgacctattccggcggcgacaagctctatctgccggtggagaatatcgatcttctg
agccgcttcggctccgaagagcagggcgtgcagctcgataagctcggcggcgtcggctgg
cagagccgcaaggccaagctcaagaagcgcatccgcgatatcgccgagaagctgatcaag
gtggcggctttgcgcgagctccgctccgccacgccgctttatccgcccgagggcgtctat
caggagttctccgcgcgctttccctatgaggagactggcgatcaggccaatgccattgag
gcggtggtggaggatctcggctcgggcaagcccatggaccggctgatctgcggcgatgtc
ggcttcggcaagaccgaggtggcgctccgcgccgcgttgatcgccgtgctcgccggcaag
caggtggcggtcgttgtcccgaccacgcttctggcccgccagcattacgctaccttcgtg
gagcgcttccgcggcctgccggtgaagatcgcccaagcctcgcgcctggtctccaccaag
gagctgaacgagaccaagaagcagatcgcttccggcgatatcgatatcgtcgtcggcacc
cacgcgctgctgggcaagagcatagagttcggcgatctcggcctcttgatcatcgacgag
gagcagcatttcggcgtcggccataaggagcggctgaagcagctgcgcgaggatgtgcac
gtgctgacgctgaccgcgacgccgatcccgcgcaccttgcagctggcgctgtccggcgtg
cgcgagatgtcgatcatcgccaccccgcccgtcgaccgcctggcggtgcgcacctatgtg
acgccgttcgatccggtgatcctgcgcgaggcgctgctgcgcgagcgctatcgcggcggc
cagaccttctatgtcgtgccgcgtatctcctatctggaggaggccggcgaattcctggcc
gagcatgtgccggagctgaaagtcggcaaggcccatggccagatgggctccaaggagctc
gaccaggtgatgaacgccttctacgaccggcaatacgacgtgctgctctccacctccatc
gtggagtccggcctcgatattccctcggccaacaccatgatcgtgcatcgcgccgatatg
ttcggcctggcggcgctgtatcagctgcgcggccgcgtcggccgctccaagatccgcgcc
tatgcctatttcaccgtaccgtccgaccggcggctaacgccggccgccgagaagcggctc
aaggtgctgcaatcgctggatagcctcggcgctggcttcatgctggccagccacgatctg
gatctgcgcggcgccggcaacctcctcggcgaggaacagtccggccatatccgcgaggtc
ggctacgagctctaccagtcgatgctggaagaggcgatccaggccatgaagggcggcgac
gagggcgaggtcgaggatcaatggtcgccgcgcatcaatctcggcaccgcggtgctgatc
ccggaagattacgtgcccgatctccagcttcgcctcggtctctatcgccggctctcttcc
gccgaagattccgccagcatcgaggcctttgccgccgagatgatcgaccgcttcggcccg
ctgccgctggaagtgcgccatcttctcgacgtggtggagatcaagcgcctctgccgccag
gctggcgtggagcagatcgatgccgggcccaagggcgcggtgctggccttccgcaataag
agcttcgccaatccggaagggctgatcgccttcatcgccaaggaaggcgctggcgtgaag
ctgcagcctgatcacaagctggtctattacgaagactggccgacgccggaagaccggctg
aacggcgcacgcgaggtgctgaagcagctcgccagaatcgccggcgaggtgaaagaggcc
gcttaa
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