Methylobacterium radiodurans: DK427_02185
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Entry
DK427_02185 CDS
T05919
Name
(GenBank) DEAD/DEAH box helicase
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meti
Methylobacterium radiodurans
Pathway
meti03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meti00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DK427_02185
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meti03400
]
DK427_02185
Enzymes [BR:
meti01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DK427_02185
DNA repair and recombination proteins [BR:
meti03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DK427_02185
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
UvrB_inter
TRCF
CarD_TRCF_RID
UB2H
AAA_30
RecG_dom3_C
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AWN34691
UniProt:
A0A2U8VMN7
LinkDB
All DBs
Position
complement(491778..495083)
Genome browser
AA seq
1101 aa
AA seq
DB search
MAKRKTRAETQTESEAPLVPTGALAVALLGLAGQGAPLVHVARDERRLEAIAAILRALDP
GIGIAILPGWDCLPYDRASPSRGVMGARAGVLRWLTDAANRPHIVLTTPPALIQRVPPPA
TWADARVVIRVGDSLDAEAMTEALRRLGYILDDRVDEPGEFAIRGRTLDVFPAASPLPCR
VEHDGTRVAQIRAYDPLTQRSHAQTEELVIDPATEIILPPGSEERLQPFTGQEHGLARFY
PALASLLDTLPEARLVVEAGAEARTQAFFEQIADGRESGGAGRGKDTGKDRGKDKDKDKP
GADPLYLAPKEWARLLRERALAAATEAADVSLPAFIRQARPTAAFAKTLRERLKAGDRIV
LAGPERALRRLVRQAERSGERRVRPVADWAAAEGAKPGEIVALEAPLDAGFRVPEAGLSV
FAAADLYGHHAGGSGPRAASLPLGEVELRTGDVAVDRDNGLCVFEGLERVGAGEALRLRF
AGDDVLMLPVDQADRVWRYGSDPEAVGLDKLSSASWRRRHSEAEATIARTARAMVALAGE
RAEARAPVLRPPEREMERFGAGFGFSLTPDQAAATDAVLADLASGRPMDRLVCGDVGFGK
TEVALRAIAAAVFAGKQVALVAPTTVLVRQHMQTLERRFGRFGIAVAQLSRLVGPAEARR
VKAGLADGSIRIVVGTNALAGKGVAFADLGLTVIDEEQRFGAKMKESLRALAGGGHVLTL
TATPIPRTLQSALVGLRALSVIATPPAVRQPIRTVIAPFEAETVRAALMREHRRGGQSFV
VCPRIEDLEPMAERLKAIVPDLAITLAHGAMKPAEMDAAMIDFADGTGDVLLATSIIESG
LDVPRANTMLVWNAERFGLAQLHQLRGRVGRGQRRGAAYLLNDPERPLSAGAEKRLRTLE
ALDRLGAGFTISARDLDHRGAGDLVGDAQAGHVRLIGLGLYQHVLQLALRAAKGEPAEDW
RPEINLGLEGAIPPDYMPEPEIRLGLYTRLLRVGSPQEIDALCAETDDRFGRMPESVETL
VTLARLRVQCGVLGISRLSGGPQGVAADFRDGRRARALALDGDLTVRDGRVILKRPAADA
AERGRLAVELLERVAEACEAA
NT seq
3306 nt
NT seq
+upstream
nt +downstream
nt
atggccaagcggaagaccagagccgagacccagaccgagtcggaggcgccgctcgtgccg
accggcgccctggcggtggccctgctggggctcgccgggcagggtgcgccgctggtccac
gtcgcccgcgacgagcggcggctcgaggcgatcgccgctatcctgcgggcgctcgatccg
gggatcggcatcgcgatcctgccgggctgggactgcctgccctacgaccgcgcctcgccc
tcgcggggcgtgatgggcgcgcgggccggcgtgctgcgctggctcaccgatgcggcgaac
cgcccccacatcgtgctgaccacgccgcccgccctgatccagcgggtgcccccgcccgcc
acctgggccgacgcccgcgtggtgatccgcgtcggagacagtctcgacgcggaggcgatg
acggaggccctccggcgcctcggctacatcctcgacgaccgggtcgacgagcccggcgag
ttcgcgatccgcgggcgcaccctcgacgtctttccggccgcctccccgctgccctgccgg
gtcgagcacgacggcacccgggtcgcccagatccgcgcctacgacccgctcacgcagcgc
tcgcacgcgcagaccgaggagctggtgatcgacccggccactgagatcatcctgcccccg
ggctcggaggagcgcctgcagcccttcacgggccaggagcacgggctggcccggttctac
ccggccctcgcctccctgctcgacacgctgcccgaggcccgcctcgtggtcgaggcgggg
gccgaggcgcggacgcaagccttcttcgagcagatcgccgacgggcgcgagagcggcggc
gcggggaggggcaaggacacgggcaaggacaggggcaaggacaaggacaaggacaagccg
ggcgccgacccgctctacctcgccccgaaggagtgggcgcggctcctccgggagcgcgca
ctggccgcggcgaccgaggcggcggacgtctccctgcccgccttcatccgccaggcccgc
ccgaccgcggccttcgccaagaccctgcgggagcggctcaaggccggcgaccggatcgtg
ctggccgggccggagcgggcgctccgccgcctggtccggcaggccgagcgctcgggcgag
cggcgggtgcggcccgtcgcggactgggccgcagccgagggcgccaagccgggcgagatc
gtggcgctcgaagcgcccctcgatgccggcttccgggtgcccgaggcggggctcagcgtg
ttcgcggcggccgacctctacggccatcatgccggcggctccgggccgcgggcggccagc
ctgccgctcggcgaggtggaactgcgcaccggcgacgtcgcggtcgaccgcgacaacggg
ctctgcgtgttcgaggggctggagcgcgtcggcgcgggggaggccctgcgcctgcgcttt
gccggcgacgacgtgctgatgctgcccgtggatcaggccgaccgggtctggcgctacggc
tcggacccggaggcggtcggcctcgacaagctttcttccgcgtcctggcgccggcgccac
agcgaggccgaggccacgatcgcccgcaccgcccgcgccatggtggcgctggccggcgag
cgcgccgaggcgcgggccccggtcctgcgcccgccggagcgcgagatggagcgtttcggc
gcgggcttcggcttcagcctgacgccggaccaggccgccgccaccgacgccgtgctcgcc
gacctcgcgtccggccggccgatggaccggctggtctgcggcgatgtcggcttcggcaag
accgaggtggcgctccgcgccatcgcggcggcggtcttcgccggcaagcaggtcgcgctg
gtggcgccgaccacggtgctggtgcgccagcacatgcagacgctggagcggcggttcggt
cgcttcggcatcgcggtcgcgcaactctcgcgcctcgtcggcccggcggaggcccggcgc
gtgaaggcggggctcgccgacggctcgatccggatcgtggtcggcacgaacgcgctcgcg
ggcaagggcgtcgccttcgcggatctcggcttgaccgtcatcgacgaggagcagcgcttc
ggcgccaagatgaaggagtccctgcgggcgctcgcgggcggcggccacgtgctgacgctc
accgccacgccgatcccccgcaccctgcaatcggcgctggtgggcctgcgcgccctcagc
gtgatcgccacgccccccgcggtgcgccagccgatccgcacggtgatcgcgcccttcgag
gccgagacggtgcgggccgcgctgatgcgcgagcaccgccgcggcggccagagcttcgtg
gtctgcccgcgcatcgaggacctggagccgatggcggagcgcctgaaggcgatcgtgccg
gacctcgcgatcaccctggcgcacggggcgatgaagccggccgagatggacgccgcgatg
atcgatttcgcggatggcacgggcgacgtgctgctcgccacctcgatcatcgagagcggg
ctcgacgtgccgcgggccaacacgatgctggtctggaacgccgagcgcttcgggctcgct
cagctgcaccagctgcgcggccgggtcgggcgcggccagcgccggggcgcggcctacctg
ctgaacgatcccgagcgccccctctcggccggcgccgagaagcgcctgcggacgctggag
gcgctcgaccggcttggcgccggctttaccatctcggcgcgcgacctcgaccaccgcggc
gcgggcgacctcgtgggcgacgcccaggccggccatgtccggctgatcgggctcggcctc
taccagcacgtgctgcagctggcgctgcgcgccgccaagggcgagccggcggaggattgg
cggccggagatcaacctggggctggagggcgcgattccccccgactacatgcccgagccc
gagatccggctcggcctctacacccgcctgctgcgggtgggctcgccgcaggagatcgac
gcgctctgcgccgagaccgacgaccgcttcggccggatgcccgagagtgtcgagaccctg
gtgaccctggcgcggctgcgggtgcagtgcggggtcctcgggatcagccggctcagcggc
ggcccgcagggcgtggcggccgatttccgggacggtcgccgcgcgcgggcgctggcgctc
gacggcgacctgaccgtgcgggacggccgggtgatcctgaagcgcccggcggcggacgcg
gccgagcgcggccgcctcgccgtggagctcctggagcgcgtcgcagaggcctgcgaggcg
gcgtga
DBGET
integrated database retrieval system
