Methylibium sp. Pch-M: C1M51_07100
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Entry
C1M51_07100 CDS
T05827
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
metp
Methylibium sp. Pch-M
Pathway
metp03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
metp00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
C1M51_07100 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
metp03021
]
C1M51_07100 (rpoC)
03400 DNA repair and recombination proteins [BR:
metp03400
]
C1M51_07100 (rpoC)
Enzymes [BR:
metp01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
C1M51_07100 (rpoC)
Transcription machinery [BR:
metp03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
C1M51_07100 (rpoC)
DNA repair and recombination proteins [BR:
metp03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
C1M51_07100 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Apocytochr_F_C
Biotin_lipoyl_2
Motif
Other DBs
NCBI-ProteinID:
QAZ39218
UniProt:
A0A4P6GYS5
LinkDB
All DBs
Position
complement(1499477..1503715)
Genome browser
AA seq
1412 aa
AA seq
DB search
MKGLLDLFKQFTPDEHFDAIKIGLASPEKIRSWSFGEVKKPETINYRTFKPERDGLFCAK
IFGPIKDYECLCGKYKRLKHRGVICEKCGVEVTQTKVRRDRMGHIDLAAPCAHIWFLKSL
PSRLGLVLDMTLRDIERVLYFEAYVVVDPGMTELKKFSIMTEDDYDAKKQQHGDEFVALM
GAEGIQKLLAEIDLDVEIERLRGDMTGSELKVKKNSRRLKVMEAFKKSGIKPQWMVMNVL
PVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLARLLELKAPEIIVRNEKRMLQEA
VDSLLDNGRRGKAMTGANKRALKSLADMIKGKSGRFRQNLLGKRVDYSGRSVIVVGPTLK
LHQCGLPKLMALELFKPFIFSRLEAMGIATTIKAAKKEVESGTPVVWDILEEVIKEHPVM
LNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAFNADFDGDQMAVHVPLSIEAQMEART
LMLASNNVLFPANGEPSIVPSQDVVLGLYYATRDRINARGEGLIFSDVVEVQRALDNGQV
EITAKIAVRLTEWTKDKESGEFVPESKLVDTTVGRALLSEILPKGLPFANINKALKKKEI
SRLINTSFRKCGLKETVVLADKLLQSGFRLATRAGISISIDDMLVPKQKHDLIERAEKEV
KEIEQQYVSGLVTAGERYNKVVDIWGKTGDEVGKVMMAQLSKQKVEDRHGKLVDQESFNS
IYMMADSGARGSAAQIRQLAGMRGLMAKPDGSIIETPITANFREGLNVLQYFISTHGARK
GLADTALKTANSGYLTRRLVDVTQDLVVTEDDCGTDAGIAMRALVEGGEVIESLRDRILG
RVTAIEVLHPETQQVVVPAGLMLDEDTLDIVEAAAVDEVKVRTPLTCHTRFGLCAKCYGR
DLGRGGLVNAGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAVASSVEAKSDGHIGFN
ATMRYVTNGKGELVVISRSGEIIISDQHGRERERHKVPYGATLNIKADQQVKAGTVLANW
DPLTRPIITEFAGKAKFENVEEGVTVAKQVDEVTGLSTLVVIDPKRRGAAKVVRPQVKLL
DAAGNEVKIPGTDHSVTIGFPIGSLVQIRDGQDLAPGEVLARIPVEGQKTRDITGGLPRV
AELFEARTPKDKGTLAEMTGTVSFGKETKGKVRLQITDPDGKVYEELVPKEKNILVHEGQ
VVNKGESIVDGPADPQDILRLLGIEELARYIVDEVQDVYRLQGVKINDKHIEVIVRQMLR
RVQIVNPGDTHYILGEQVERASMLDTNDKMRADGKMIATHADVLLGITKASLSTDSFISA
ASFQETTRVLTEAAIMGKRDELRGLKENVIVGRLIPAGTGLAFHRARKAKEEMDDAERRS
IALQEAEEQALLAPATTAEVVVGEEAPPPPAQ
NT seq
4239 nt
NT seq
+upstream
nt +downstream
nt
atgaagggactactcgaccttttcaagcagttcaccccggatgagcatttcgatgccatc
aagatcggcctggcgtccccggaaaagatccggagctggtcgttcggcgaggtgaagaag
cccgagaccatcaactaccgtaccttcaagccggaacgcgacggcctgttctgcgccaag
atcttcggtccgatcaaggactacgagtgcctgtgcggcaagtacaagcgcctcaagcac
cgtggcgtgatctgcgagaagtgcggtgtcgaggtcacgcagaccaaggtgcgtcgtgat
cgcatgggtcacatcgacctggccgcgccctgcgcgcacatctggttcctgaagtcgctg
ccgtcgcgcctgggcctggtgctcgacatgacgctgcgcgacatcgaacgcgtgttgtac
ttcgaggcctatgtggtcgtcgacccgggcatgaccgagctgaagaagttctcgatcatg
accgaggacgactacgacgcgaagaagcagcagcacggcgacgagttcgtcgcgctgatg
ggcgccgagggcatccagaagttgctggccgagatcgacctcgacgtcgagatcgagcgc
ctgcgcggcgacatgaccggctccgagctcaaggtcaagaagaactcgcgtcgcctgaag
gtgatggaggccttcaagaagtcgggcatcaagccgcagtggatggtgatgaacgtgctg
ccggtgctgccgccggacctgcgtccgctggtgccgctggacggcgggcgcttcgccacg
tccgacctgaacgacctgtaccgccgcgtcatcaaccgcaacaaccgcctggcccgcctg
ctcgaactgaaggcgccggagatcatcgtgcgcaatgagaagcgcatgctgcaggaagcg
gtggactcgctgctcgacaacggccgccgaggcaaggcgatgacgggcgcgaacaagcgc
gcgctcaagtcgctggccgacatgatcaagggcaagagcggccgcttccgccagaacctg
ctgggcaagcgcgtcgactactcgggccgttcggtcatcgttgtgggcccgacgctcaag
ctgcaccagtgcggcctgcccaagctgatggcgctcgagctgttcaagcccttcatcttc
tcgcgcctggaagccatgggcatcgccacgaccatcaaggcggcgaagaaggaagtggaa
tccggcacgccggtggtctgggacatcctcgaggaagtcatcaaggaacacccggtgatg
ctgaaccgcgcgccgacgctgcaccgcctgggcatccaggcgttcgagccggtgctgatc
gagggcaaggcgatccagctgcacccgctggtctgcgcggcgttcaacgccgacttcgac
ggcgaccagatggccgtccacgtgccgctgtcgatcgaggcgcagatggaagcccgcacg
ctgatgctggcctccaacaacgtgctgttcccggccaacggcgaaccgtcgatcgtgccg
tcgcaggacgtcgtgctgggtctgtactacgcgacccgcgatcgcatcaacgccaggggc
gaaggcctgatcttctccgacgtggtcgaggtgcagcgcgcgctcgacaacggccaggtg
gagatcaccgcgaagatcgccgtgcgtctgaccgagtggaccaaggacaaggagagcggc
gagttcgtgccggagtccaagctggtcgacaccacggtcggccgtgcgctgctgtcggag
atcctgcccaagggcctgccgttcgccaacatcaacaaggcgctgaagaagaaggagatc
tcgcggctgatcaatacctccttccgcaagtgcggtctgaaggagaccgtggtgctggcc
gacaagctgcttcagagcggcttccgcctggccacgcgcgccggtatctcgatctcgatc
gacgacatgctggtgcccaagcagaagcacgacctgatcgagcgcgccgagaaggaagtc
aaggagatcgagcagcagtacgtctcgggtctcgtgacggccggggagcgctacaacaag
gtcgtcgacatctggggcaagaccggcgacgaggtcggcaaggtcatgatggcccagctg
tccaagcagaaggtcgaggaccgtcacggcaagctggtggaccaggagtcgttcaactcc
atctacatgatggccgactccggtgcgcgcggctccgccgcgcagatccgccagctggct
ggcatgcgcggcctgatggccaagccggacggctcgatcatcgagacgcccatcacggcg
aacttccgtgaaggcctgaacgtgctgcagtacttcatctccacccacggcgcccgcaag
ggcctggcggacacggcgctgaagaccgcgaactccggctacctgacgcgccgcctggtc
gacgtgacacaggatctggtggtgaccgaggacgattgcggcaccgacgccggcatcgcg
atgcgcgcgctggtcgagggcggcgaggtcatcgagtcgctgcgcgaccgcatcctcggc
cgcgtgacggccatcgaggtgctgcatccagagacccagcaggtggtcgtgccggccggg
ctgatgcttgacgaggacacgctcgacatcgtcgaggcggctgccgtcgacgaggtgaag
gtccgcacgccgctgacctgccatacgcgcttcggcctgtgcgccaagtgctacggccgc
gacctcggtcgcggcgggctggtgaacgccggcgaggcggtgggcgtgatcgccgcacag
tcgatcggtgagcccggcacgcagctgacgatgcggaccttccacatcggtggcgcggcg
tcgcgtgcggcagtggcctccagcgtcgaggcgaagtccgatggtcacatcggcttcaac
gcgacgatgcgctacgtgaccaacggcaagggcgagctggtggtgatctcccgttccggc
gagatcatcatctccgaccagcacggccgcgaacgcgagcgccacaaggtgccgtacggc
gcgacgctcaatatcaaggccgaccagcaggtcaaggccggcaccgtgctggccaactgg
gacccgctgacccggccgatcatcaccgagttcgccggcaaggcgaagttcgagaacgtc
gaggaaggcgtcaccgtcgccaagcaggtggacgaggtgacgggcctgtcgacgctggtg
gtcatcgacccgaagcgccgtggcgcggccaaggtggtgcgcccgcaggtgaagctgctc
gacgcagccggcaacgaggtgaagatccccggcaccgaccactcggtgacgatcggcttc
ccgatcggctcgctggtgcagatccgcgatggtcaggacctcgccccgggcgaggtgctg
gcccgcatcccggtcgaaggccagaagacgcgcgacatcaccggcggtctgccgcgggtg
gccgagttgttcgaagcccgcacgcccaaggacaagggcaccctggccgagatgaccggg
accgtgtcgttcggcaaggagaccaagggcaaggtgcgcctgcagatcaccgacccggac
gggaaggtctacgaagagctggtgccgaaggagaagaacatcctggtgcacgaaggccag
gtggtcaacaagggcgagtccatcgtcgacggcccggccgatccgcaggacatcctgcga
ctgctggggatcgaggagctggcgcgctacatcgtcgacgaggtgcaggacgtctaccgc
ctgcagggcgtgaagatcaacgacaagcacatcgaggtgatcgttcgccagatgctgcgc
cgcgtgcagatcgtcaacccgggcgacacgcactacatcctgggcgagcaggtcgagcgc
gcctcgatgctcgacaccaatgacaagatgcgtgccgatggcaagatgatcgcgacgcat
gccgacgtgttgctgggtatcaccaaggcctcgctgtcgaccgattcgttcatctcggcg
gcgtcgttccaggagaccacgcgcgtgctgaccgaggcggcgatcatgggcaagcgcgac
gaactccggggtctgaaggagaacgtcatcgtcgggcgcctgatcccggccggaaccggt
ctggccttccaccgggcccgcaaggccaaggaggagatggacgacgccgaacgccgctcc
atcgcgctgcaggaggccgaggagcaggccctgctggcgcccgcgacgaccgccgaagtg
gtggtcggcgaggaagcgccgccgcccccggcgcagtga
DBGET
integrated database retrieval system
