Methyloversatilis sp. RAC08: BSY238_3465
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Entry
BSY238_3465 CDS
T04449
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
metr
Methyloversatilis sp. RAC08
Pathway
metr03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
metr00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
BSY238_3465 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metr03400
]
BSY238_3465 (mfd)
Enzymes [BR:
metr01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
BSY238_3465 (mfd)
DNA repair and recombination proteins [BR:
metr03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
BSY238_3465 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
CarD_TRCF_RID
Helicase_C
MFD_D3
ResIII
UB2H
AAA_16
AAA_30
DUF4217
Phage_Mu_Gp45
AAA_22
Motif
Other DBs
NCBI-ProteinID:
AOF83852
UniProt:
A0A1B3LSM2
LinkDB
All DBs
Position
complement(3769081..3772530)
Genome browser
AA seq
1149 aa
AA seq
DB search
MTSSPSLLNSLLRPLPRPRPASRIDWPPLPGGAQALALAGLAKDTGAPLVVVAARPMDAQ
RLLDELRWFAPSLRSFQLPDWETLPYDQFSPHNDLVSERLETLYALMRGELDVLVVPAST
ALYRLAPREYLAAHTFFVKQGEKLDVERLRLQLTVAGYGPVTQVVAPGEYSVRGGLVDLY
PMGAALPYRIDLFDDEVESIRTFDVDTQRTVFPTKEIRLLPAREFPMDDKARTAFRSRFR
EAFEGDPSKSVIYKDVSNGVPTAGIEYYIPLFFEHTDTLFDYLPANALVALDAEVNDAIA
DFWRDTKSRFDLMKGERARPILPPSELFLSEEQFHVSLANRAIVRLGRGAPDVSAGAAAL
PELGIERKAADPLHRLRAAVAAQRVVVIAESAGRRETLIDYFAEYGLASAPVDGFDAAIA
ADTALTVAIGPLIEGFALSSPAIALVTESELYPTQARSRGKRDGRKVTAENFLRDLTELK
IGDPVVHLQHGIGRYIGLTHMDLGEGETEFLHLEYADGDKLYVPVSQLHQISRYSGAPGD
QVHLHKLGSGQWDKAKKRAAAQVRDTAAELLALYAQRSARKGHTFGFKQHDMDAFAEGFG
FEETPDQMGAITAVIGDMTSGRPMDRLVCGDVGFGKTEVALRAAFVAVADGKQVAILAPT
TLLAEQHYQTFSDRFAQVAHEWPARIAEISRFKSAKEQTQALKEAAEGKIDVLIGTHRLL
QKDVKFARLGLVIIDEEHRFGVRQKEALKSLRAEVDVLTLTATPIPRTLAMSLEGIRDFS
VIATAPQKRLAIKTFVSPWSRGLIREAVLREFKRGGQVYFLHNEVDTIEEMGTRLADLLP
EARIVIGHGQLPERELERVMREFTQRKHNLLLCTTIIETGIDNPNANTIIINRADRFGLA
QLHQLRGRVGRSHHQAYAYLLTDAHAKPTEQGRRRLEAITMMEELGSGFYLAMHDLEIRG
AGEVLGESQSGEMQEIGFNLYTDMLKSAVKSLQKGEDADLTQPLDIVSEINLHTPALLPT
AYCPDVHERLTLYKRLANCDTTDEVSALREELVDRFGQMPDQTRALLETHRLRIAAKPLG
ITKIDAHDTQILVTFVPNPPIEPIRIIQLVQKDRNFKLAGQDRLSWKRSSVDLDARVAGV
RELMKKLTG
NT seq
3450 nt
NT seq
+upstream
nt +downstream
nt
atgacttcatcgccctccctgctgaactcacttctgcgcccgctgccgcgcccgcgcccg
gccagccgcatcgactggccgccgctacccggcggcgcccaggcgctggcgctggccggc
cttgcgaaagacaccggcgcaccgctggtcgtcgtcgcggcacggccgatggacgcgcag
cgcctgctcgacgaactgcgctggttcgcgccgtccttgcgcagcttccagctgccggac
tgggaaaccctgccctacgaccagttctcgccgcacaacgacctggtgtcggaacggctg
gagacgctgtatgcgctgatgcgcggcgaactggacgtgctggtcgtgccggcctcgacc
gcgctgtaccggctggcgccgcgcgaatatctcgccgcgcacacctttttcgtcaagcag
ggcgaaaagctcgacgtcgagcgcctgcgcctgcagctcaccgtggccggctacggtccg
gtcacccaggtggtggccccgggcgagtacagcgtgcgcggcgggctggtcgacctgtat
ccgatgggcgccgccctgccctaccgcatcgacctgttcgacgacgaagtggaaagcatc
cgcaccttcgacgtggacacgcagcgcaccgtgttcccgaccaaggaaatccgcctgctg
ccggcacgcgaattcccgatggatgacaaggcgcgcacggccttccgctcgcgctttcgc
gaagctttcgagggcgatccgtcgaagtcggtcatctacaaggacgtgtcgaacggcgtg
cccactgccggcatcgagtactacatcccgctgttcttcgaacacaccgacacgctgttc
gactacctgccggccaacgcgctggtggcgctcgacgccgaggtgaatgacgcgatcgcc
gacttctggcgcgacacgaaaagccgcttcgacctgatgaagggtgagcgggcgcggccc
atcctgccgccgagcgaactgttcctgtcggaagagcagttccacgtgtcgctcgccaat
cgcgccatcgtgcgcctcggacgcggcgcgccggacgtgtcggcgggtgcggcggccttg
ccggaactgggcatcgagcgcaaggcggccgacccgctgcatcgccttcgcgccgcggtc
gcggcgcagcgcgtcgtggtcatcgccgaatcggccgggcggcgcgaaacgctgatcgac
tacttcgccgaatacgggctggccagcgcgccggtcgatggcttcgacgccgccatcgcc
gcagacaccgcgctgaccgtcgccatcggtccactgatcgaaggcttcgcgctgtcatcg
cccgcgattgcgctggtgaccgaaagcgagctgtatccgacgcaggcacgttcgcgcggc
aagcgcgacggccgcaaggtcaccgccgaaaacttcctgcgcgacctgaccgagctgaag
atcggcgatccggtggtgcatctgcagcacggcatcgggcgctacataggcctgacccac
atggatctgggcgaaggcgaaaccgaattcctgcatctggaatacgccgatggcgacaag
ctgtacgtgccggtgtcgcagctgcaccagatcagccgctacagcggtgcgccgggcgac
caggtgcacctgcacaagctcggctccggtcagtgggacaaggcgaagaagcgcgccgcc
gcgcaggtgcgcgacaccgcggccgaactgctggcgctgtacgcgcagcgctcggcgcgc
aagggccacaccttcggcttcaagcagcacgacatggacgccttcgccgaaggtttcggc
ttcgaggaaacgccggaccagatgggtgccatcaccgcggtgatcggcgacatgacgtcc
ggccggccgatggaccgcctggtgtgcggcgacgtcggtttcggcaagaccgaagtcgcg
ctgcgcgccgccttcgtcgcggtggccgacggcaagcaggtcgccatcctcgcgccgacc
acgctgctggccgagcagcactaccagaccttcagcgaccgcttcgcccaggtggcgcac
gaatggccggcgcgcatcgccgaaatctcgcgcttcaagagcgcgaaggaacagacgcag
gcgttgaaggaagcggccgaaggcaagatcgacgtactgatcggcacccaccgcctgctt
cagaaggacgtgaagttcgcgcgcctgggcctggtcatcatcgacgaggaacaccgcttc
ggcgtgcgtcagaaggaagcgctgaagtcactgcgcgccgaggtcgacgtgctgacgctg
acggcgacgcctatcccgcgcacattggccatgtcgctcgaaggcatccgcgacttctcc
gtcatcgccaccgcgccgcagaagcgcctcgccatcaagaccttcgtcagtccgtggtcg
cgcgggctgatccgcgaagcggtgctgcgcgaattcaagcgcggcggacaggtgtatttc
ctgcacaacgaggtcgacaccatcgaagagatgggcacccgtcttgccgacctgctgccc
gaggcgcgcatcgtcatcggccacggtcagctgcccgagcgcgagctggaacgcgtgatg
cgcgaattcacgcagcggaagcacaacctgctgctgtgcacgaccatcatcgaaaccggc
atcgacaacccgaacgccaacaccatcatcatcaaccgcgccgaccgcttcggtctggcc
cagctgcaccagttgcgcggccgggtcgggcgcagccatcaccaggcctacgcctacctg
ctgaccgacgcgcacgccaaaccgaccgaacagggccgccgccggctggaagccatcacg
atgatggaagagctgggttccggcttctatctcgcgatgcacgatctggaaattcgcggt
gcgggcgaggtgctgggcgaatcgcaatccggtgaaatgcaggaaatcggcttcaacctg
tacaccgacatgctcaagagcgcggtcaaatcgctgcagaagggcgaagacgccgacctc
acgcaaccgctggacatcgtgtcggaaatcaatctgcacacgccggcgctgctgccgacc
gcctactgcccggacgtgcacgagcgcctgacgctgtacaagcgcctcgccaattgcgac
acgaccgacgaagtgtcggcgctgcgcgaagaactggtcgaccgcttcggacagatgccg
gaccagacgcgcgccctgctcgaaacccaccgcctgcgcatcgccgcgaagccgctcggc
atcaccaagatcgacgcgcacgacacgcagatcctggtcaccttcgtgcccaacccgccg
atcgaaccgatccgcatcatccagctcgtgcagaaggaccgcaacttcaagctggccggc
caggaccggctgtcgtggaagcgctcgagcgtcgacctggatgcccgcgtggcgggcgtg
cgcgagctgatgaagaaactgaccggctga
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