Methylococcus geothermalis: GNH96_06650
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Entry
GNH96_06650 CDS
T06585
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
metu
Methylococcus geothermalis
Pathway
metu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
metu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
GNH96_06650
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
metu03400
]
GNH96_06650
Enzymes [BR:
metu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
GNH96_06650
DNA repair and recombination proteins [BR:
metu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
GNH96_06650
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
TRCF
UvrB_inter
MFD_D3
Helicase_C
CarD_TRCF_RID
ResIII
SNF2-rel_dom
UB2H
AAA_30
ERCC3_RAD25_C
Glyco_tran_WecG
Motif
Other DBs
NCBI-ProteinID:
QJD31345
UniProt:
A0A858QCB1
LinkDB
All DBs
Position
complement(1373889..1377341)
Genome browser
AA seq
1150 aa
AA seq
DB search
MSSLLKPVLPALHHRAVCWSGLHGCGDSLAIASAFEASPGLFLVVTADAQGALRIEQEVR
TFLGTDIPILPFPDWEILPYDVFSPLPEITSQRLRTFFDLSRTQHGLLITPVSTLMHRVA
PRTHTLANTFSIRAGSALNIDQTRQTLESVGYQCVSQVYQHGEFAIRGSILDLYPMGSEV
PYRIELFDDEVETIRSFDTESQRSIEKVSGIELFPAREFPFDDAAIKRFRRNFRAEFPDA
VSHSALYQDVSKGIAAGGIEYYIPLFVERMDTLFDYLPADTTLILHGDVEQAASAYYAEA
VGRHDQRLHNVDRPPLPPARLFLEPPALASTLATFARIAIPPADAASGGIAAVAFDCTPP
PPLSPDSKTQPPYEPLQRFIEGFAGKILLVAESAGHRETLAANLAKFRIRPRIVDGWREF
LAADDPLCLTVAALDHGLVISQPPLAIVTEAQLSGDKAQQRRRRQRTHAKDIGQFLRNLE
ELEIGAPVVHREHGVGRYLGLQRIETGGVESEFLTLRYANDDKLYVPVSALGMVSRYAGA
DPEHAPLHRLGSEQWAKARRKALEQVRDVAAELLDIHAKRAAASRKSFATLTEEYLGFAA
QFPFEETPDQETAIQDVIRDLAAARPMDRVICGDVGFGKTEVAMRAAFIAAQNGRQVAVL
VPTTLLAQQHYKNFCDRFADWPMRIEVLSRFVSKKDQTQAIADIGDGKVDIIIGTHRLLQ
KDIRFKDLGLVIIDEEHRFGVAHKEHFKKLRSEVDCLALTATPIPRTLDMALTGLREISI
IATPPPHRHVIRTFVTEWDDALVQEALHREIKRGGQVYFVHNKIETQPKLAERLEKLVPG
VRIRIAHGQMPERELENIMLDFYHQRFNVLLCTTIVESGIDVPSANTILIDRADTFGLAQ
LHQLRGRVGRSHHRAYAYLLVPPKKAMTADAVKRLDAIEAAGELGAGFLLSSQDLEIRGA
GELLGEDQSGQIQEIGFTLYTELLERAVNALKSGRQPELETDHLGGTEVDLQCAALIPEE
YLPDVHTRLVLYKRIANARNDDELRELQIEMIDRFGLLPDATKHLFAISTLKNEAAKLGI
AKIEAGASGGRLIFEAQPNIDPAAIILLIQKEAATYKLDGPDKLRFIAKLPTPAERIQFV
EALLGRLAAK
NT seq
3453 nt
NT seq
+upstream
nt +downstream
nt
ctgtcctcgctgttgaaaccggtgttacccgccctgcaccatcgggccgtctgctggagc
ggtctgcatggctgcggcgattcgctcgcgatcgcttcagccttcgaggcatcgccgggc
ttgtttctggtcgttaccgccgatgcgcaaggcgccttgcgcatcgaacaggaagtgagg
acgtttctaggcacggacataccgatacttccgttccccgactgggaaatcctaccgtac
gacgttttttcccctctgccggaaatcacctcgcaaaggctgcggacattcttcgactta
tccaggacgcagcacggcctgctcatcacgccggtttccaccctgatgcatcgcgtggcc
ccgcggacccacaccctggccaatacgttttccatacgcgccggcagcgccctgaatatc
gaccagacccggcagaccctggaaagcgtcggctatcagtgcgtatcgcaggtataccag
cacggcgagttcgcgatccggggttcgatacttgacctttacccgatgggaagcgaggtg
ccttaccgcatcgaactgttcgacgacgaggtcgaaacgatccgttccttcgatacggaa
agccagcgctcgatcgaaaaagtgtcagggatagaactttttcccgcccgtgaatttcct
ttcgacgacgcggcgatcaaacggttccggcggaatttccgtgccgaatttcccgacgcc
gtgagtcacagcgccttgtaccaggatgtcagcaagggaatcgccgccggcggcatcgaa
tactacatacccctgttcgtggaacggatggatacgctgttcgattacctgccggccgat
acgaccctgatactgcacggcgacgtcgagcaagccgcctcggcctactacgccgaagcc
gtcggccgccacgaccagcgcctccacaatgtcgaccggccgccgctgccccctgcccgg
ctgtttctggaaccaccggcgctcgcatccaccctggcgaccttcgctcggatcgccatc
ccgccggccgatgccgcgtccggcggcatcgccgccgtggcgttcgactgcaccccgccc
ccccccttgagtcccgacagcaagacccagccgccctacgaaccactccagcgcttcatc
gagggattcgccgggaaaatcctcctggtggcggaatccgccggccatcgcgaaaccctg
gccgccaatctcgcgaaattccggatccggcccaggatcgtcgacggttggcgggaattt
ctcgccgccgacgacccgctgtgcctgacggtggccgctctggatcatgggctggtcatt
tcccagccgccgctggcgatcgtgaccgaggcccagctttccggcgacaaggcccagcag
cgccggcgccggcagcgcacgcacgccaaagatatcggccaattcctgcgcaacctggag
gaactggaaatcggcgcgccggtggtgcaccgcgaacacggcgtcggccgctatctcggc
ctgcagcggatcgaaaccggcggcgtggaatcggagttcctgaccctgcgctatgccaac
gacgacaagctctacgtgccggtttcggcgctggggatggtcagccgctacgccggcgcg
gacccggagcatgcgccgctgcaccgcctgggcagcgagcaatgggccaaggcgcgccgc
aaggcgctggagcaagtccgtgacgtcgccgccgaattgctcgacatccacgccaagcgg
gccgcggcgagccgcaagagcttcgccaccctgaccgaagaatacctaggctttgccgcc
cagttcccgttcgaggaaacgcccgaccaggaaaccgcgatccaggacgtcatccgcgac
ctcgccgccgcccgtccgatggaccgggtgatttgcggcgacgtcggcttcggcaagacc
gaggtcgccatgcgggccgccttcatcgccgcccagaacggccgccaggtcgccgtgctg
gtgccgacgacgctgctggcccagcagcactacaagaacttctgcgatcgcttcgccgac
tggccgatgcggatcgaagtgctgtcgcgcttcgtctccaagaaggaccagacccaggcc
atcgcggacatcggcgatggcaaggtcgacatcatcatcggcacccaccggttgctgcag
aaggacatccgcttcaaggatctggggctggtcatcatcgacgaggagcaccgcttcggg
gtcgcccacaaggagcatttcaagaaactgcgcagcgaagtggactgcctggcgctgacg
gccacgcccattccacgcaccctggacatggcgctgaccggcctgcgcgagatttccatc
atcgccacccccccgccgcaccgccacgtcatccgcaccttcgtcaccgaatgggacgac
gccctggtgcaggaggccctccaccgcgagatcaagcgcggcggccaggtttatttcgtg
cacaacaagatcgagacccaacccaagctggcggagcggctggagaaactggtgcccggc
gtgcgcatccgcatcgcccacggccagatgccggagcgcgagctggaaaacatcatgctg
gacttctaccaccagcgcttcaacgtgctgctttgcaccaccatcgtggaaagcggcatc
gacgtgcccagcgccaacaccatcctgatcgaccgcgccgacaccttcggcctggctcag
ctccaccagctgcgcggacgggtcggacgctcccaccaccgcgcctacgcctatttgctg
gtgccgccgaaaaaggccatgaccgccgatgcggtgaagcgcctggatgcgatcgaggcg
gcgggcgaactcggcgccggcttcctgctatcctcgcaggacctggagatacgcggcgcc
ggcgaactgctgggcgaggaccagagcggccagatccaggaaatcggctttaccttatat
acggagttgctggagcgcgccgtcaacgcgctgaaatcgggcaggcagccggagctggag
accgatcatctcggcgggaccgaggtcgacctgcagtgcgccgccctgattccggaggaa
tacctgcccgacgtgcacacccgcctggtgctgtacaagcgcatcgccaatgcccgcaat
gacgatgagctgcgcgagctgcagatcgagatgatcgaccgtttcggcctgttgccggac
gcgaccaagcacttgttcgcgatcagcacgctgaagaacgaggccgccaagctgggcatc
gccaagatcgaagcgggcgccagcggcgggcggctgattttcgaggcccagcccaacatc
gacccggccgcgatcatcctgctgatccagaaggaggcagccacctacaagctggacggc
ccggacaagctgcggttcatcgccaagctccccaccccggcggaacgcatccagttcgtg
gaggccctgctgggaagactggcggccaaatga
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