Methylobacterium sp. XJLW: A3862_12400
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Entry
A3862_12400 CDS
T05508
Name
(GenBank) RNA helicase
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
metx
Methylobacterium sp. XJLW
Pathway
metx03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
metx00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
A3862_12400
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
metx03019
]
A3862_12400
Enzymes [BR:
metx01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
A3862_12400
Messenger RNA biogenesis [BR:
metx03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
A3862_12400
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
UTP25
AAA_22
CMS1
Motif
Other DBs
NCBI-ProteinID:
AWV16204
LinkDB
All DBs
Position
complement(2723552..2725102)
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AA seq
516 aa
AA seq
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MTQFTDFGLAQPVLRALSEAGYVAPTPIQAQAIPPAMEGRDLCGIAQTGTGKTAAFALPI
LHRLSLSDRRAPRRGCRVLVLSPTRELANQIAESFSDYGRHLSFTNTVVFGGVTISRQER
ALAPGVDILVATPGRLIDLIERRSLILDGVEILVLDEADQMLDLGFIHALKRIVKMLPEK
RQSLFFSATMPKNIAGLAAQYLTDPVQVAVTPVATTAERVDQQVIFVHTGAKQALLGHIL
RDPAIERVLVFTRTKHGADRVVRGLDKVGIAAAAIHGNKSQPQRERALASFKDGSCRVLV
ATDIAARGIDVEGVSHVVNFDLPNVPESYVHRIGRTARAGADGLAISFCNDEEKAYLRDI
ERVTRQKVPVAGFPEGFTPPSRQEAAEIAREEERRPERQQQRPGGGRQGQRPRQSQGRPQ
QGRPEGGRGFGGPGQGAPRQGRPQEGRADARGDGRGHAPQGRDVRADRPARPQGERPNQG
RPNRDARPQRADARPRSGGGGGEGRSIGWLERAPRS
NT seq
1551 nt
NT seq
+upstream
nt +downstream
nt
ttgacccaattcaccgatttcggcctcgcccagcccgtgctgcgggcgctcagcgaggcc
ggctacgtcgcgccgaccccgatccaggcccaggcgatcccgcccgccatggaaggccgc
gacctctgcggcatcgcccagaccggcaccggcaagaccgcggccttcgcgctgccgatc
ctgcaccgcctctcgctctcggaccgccgcgcgccgcgccgcggctgccgggtgctggtg
ctctcgcccacccgcgagctcgccaaccagatcgccgaatccttctcggattacggccgt
cacctgtccttcaccaacacggtggtgttcggcggcgtcaccatcagccggcaggagcgc
gccctggcgccgggcgtcgacatcctcgtcgccacccccggccggctgatcgacctgatc
gagcgtcgctcactgatcctcgacggcgtggagatcctcgtcctcgacgaagccgatcag
atgctcgacctcggcttcatccacgccctcaagcgcatcgtgaagatgctgcccgagaag
cgccagagcctgttcttctcggcgaccatgccgaagaatatcgccggcctcgcggcgcag
tatctcaccgatccggtccaggtcgcggtgacgcccgtcgccaccacggcggagcgggtc
gaccagcaggtgatcttcgtccacaccggcgccaagcaggcgctgctcggccacatcttg
cgcgatccggcgatcgaacgcgtcctggtcttcacccgcaccaagcacggcgccgaccgc
gtcgtccgcgggctcgacaaggtcggcatcgcggcggcggccatccacggcaacaagagc
cagccgcagcgcgagcgggcgctggcgtccttcaaggacggctcctgccgggttctggtc
gccaccgacatcgcggcccgcggcatcgacgtcgagggcgtgagccacgtggtcaatttc
gacctgccgaacgtgccggagagctacgtccaccggatcggccgcaccgcccgggccggc
gcggacgggctcgccatctcgttctgcaacgacgaggagaaggcctacctgcgcgacatc
gagcgggtgacccggcagaaggtgccggtggcgggcttccccgagggcttcaccccgccg
tcccgccaggaggcggccgagatcgcccgcgaggaggagcgccggcccgaacggcagcag
cagcgtcccggcggcggccgccagggtcagcggccccggcagtcgcagggccgtccccag
cagggtcggccggagggtggccgcggcttcggcggtcccggccagggtgcgccccggcag
ggccggccccaggagggccgggccgacgcccgcggcgacgggcggggtcatgccccgcag
ggccgcgacgtccgcgccgaccggccggcacgaccgcagggcgagcgccccaaccagggc
cgtccgaaccgcgacgcccggccccagcgggccgatgcccggccgcgcagcggcgggggc
ggcggcgagggtcgcagcatcggctggctggagcgggcgccccgctcctga
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