Methylophilus sp. TWE2: ACJ67_09665
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Entry
ACJ67_09665 CDS
T04002
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
meu
Methylophilus sp. TWE2
Pathway
meu03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
meu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
ACJ67_09665
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
meu03400
]
ACJ67_09665
Enzymes [BR:
meu01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
ACJ67_09665
DNA repair and recombination proteins [BR:
meu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
ACJ67_09665
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
MFD_D3
CarD_TRCF_RID
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
AKR43664
UniProt:
A0A0K0SWU6
LinkDB
All DBs
Position
complement(2028316..2031723)
Genome browser
AA seq
1135 aa
AA seq
DB search
MAVSFPVIGHPQRFSFQSQGLDSQALAELACGLKATNTPLVVLTASAFEAQRLMDEIPFF
GKEIAVHLLPDWETLPYDVFSPHPDLTSERLATLYQLSQNQSNVVIVPMATALLRLPPVA
YLAAHSFMLKKGQRLDVEALRNQCAQAGYHHVSQVMAPGEFSVRGGLVDLFPMGSAFPYR
IDLFDDEIETIRTFDIDTQRSVYPVPEIRMLPAREFPMDEAAITRFRSQFREYFEGDPQR
AKIYKDVSKGTPSGGVEWYLPLFFEQTATLFDYLPTQTVLCLHGDLDKAAQTFWADASTR
YRLMAHDAEKPILRPETLLQKADEFFKRTHDFAFVTQQIAQQTVLPPVDVDRRAEQPLHK
LQAFIEQFDGRVLIAAESLGRRETIAQLFSDHGLSFSLAEDWAGFAQSNFPVMLGVAPLH
QGMVDKDARAGALAVVTEAELYASTVRQQRRRNQEKARNAEGMLKDLSELRIDDPVVHEQ
HGVGRYKGLVNIDFGEGETELLLIEYFGDDKLYVPVSQLFLISRYSGGPPESAPLHRLGS
GQWDKAKKKALKQIRDTAAELLNLYAQRAARKGHAFTLGLHDYEAFCEGFPFEETPDQLD
AIEAVIKDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHYQ
NFVDRFAEWPIKIAEISRFRTAKEQAEALKGLADGSIDIIIGTHRLIQKDVKFKNLGLAI
LDEEHRFGVRQKEQMKALRAEVDVLTLTATPIPRTLSMAMEGLREFSVISTPPQKRLAIK
TFHTPYSDGIIREAVMREFKRGGQVYFLHNEVDTIYVMKEKLEKIVPEARIAIGHGQLRE
RELEHVMRDFYQQRANLLLCTTIVETGIDVPTANTMIINRADMFGLAQLHQLRGRVGRSH
HQAYTYLLTDPHRNITPQAQKRLDAIQLLEDLGAGFHLAMHDLEIRGAGELLGDSQSGEM
QEIGFNLYSEMLNHAVKQLKAGKEPDLDAPLGVTTEINLHTPALLPNNYCPDVHERLVIY
KRLANCEDDDALDAMQEELIDRFGLLPEPGEALIACHRLRIAAKPLGIVKIDASDAAIQL
QFNPKADIDPMKLINLLQRDKRCRMNGPDKLRVTVQLGNLNHRVELVKTLLKEFM
NT seq
3408 nt
NT seq
+upstream
nt +downstream
nt
atggcagtttcattccccgtcatcgggcatccgcagcgcttttcttttcaaagtcagggc
ctggatagtcaggcattagccgagctggcttgtggtttaaaagcaacaaacacgccgtta
gtggtcttaacggcaagtgcgtttgaagcacagcggctgatggatgaaattccgttcttt
ggcaaagagattgctgtgcatctgttgccagactgggaaaccctaccctatgacgtgttt
tctccgcatcctgacttgacctccgagcgcctggcaaccttgtatcaactgagccagaac
cagagcaatgtcgtgattgtgccgatggcaaccgcattattgcgcctgccgcctgtggca
tatctggcagcgcattcgtttatgctcaaaaaaggccagcggctggatgtggaggccttg
cgcaatcaatgtgcacaggccggttaccaccatgtgagccaagtgatggcgccgggtgag
ttcagtgtgcgcggcgggctggtggatttattccccatgggtagcgcctttccctaccgc
atagatttgttcgatgacgaaatcgaaaccatacgcacatttgatatcgacacccagcgc
agtgtctatccagtgcctgaaatccgcatgctgcctgcgcgtgagttcccgatggatgaa
gcggcgatcacgcgctttcgcagccagttccgcgaatattttgagggcgacccgcaacgc
gccaaaatttacaaggatgtgagcaaaggcacgcccagtggcggggtcgaatggtattta
cccctgttttttgaacagacggcgacgctgtttgattatttacccactcaaacagttctt
tgcctgcatggggacctggacaaggcagcgcaaacattctgggcggatgccagtacgcgt
taccgcctgatggcacatgacgcagaaaaacccatcttgcgcccggaaacattgctacaa
aaagccgatgagttttttaagcgcacgcatgatttcgcgtttgttacgcagcaaattgcc
caacaaaccgttttgccaccggtggatgtagaccgtcgcgccgagcagcccctgcataag
ctgcaagcgtttattgagcaatttgacgggcgggtattgattgccgccgagagcctgggt
cgccgcgagaccattgcgcaactattcagcgatcacggtctgagcttttcactggctgaa
gattgggccgggtttgcccaatccaacttcccggttatgctgggggtggcgccattgcat
caaggcatggtggacaaggatgcacgcgcgggcgcattggccgttgtcaccgaggcagaa
ctctatgccagcaccgtgcgccagcagcgacgccgtaatcaggaaaaagcgcgcaatgcc
gaaggcatgctcaaagacttgtccgagttgcggattgatgacccggtggtacacgagcag
catggggtagggcgctacaaaggccttgtgaatatcgactttggcgaaggcgaaaccgag
ctattgctgattgaatattttggcgatgacaagctgtacgtgcctgtctcgcaattattc
ctgatttcacgctattccggcgggccgcctgaaagtgcgcctttgcatcgcctgggcagt
gggcaatgggataaagccaagaaaaaagccctgaagcaaatccgagataccgccgccgag
ttgcttaacttgtatgcacaacgcgctgcgcgtaaaggccacgcctttacactggggctg
catgattacgaagccttttgcgaaggctttccgtttgaagagacgcctgatcaactcgat
gccatcgaagcggtcatcaaagatatgcaatctggccgccccatggataggctggtgtgc
ggcgatgtcggctttggcaaaaccgaggttgcattacgcgctgcgtttgtggccgtgatg
ggcggccgtcaagtggcggtgctggtgccaaccacgttgctggctgagcagcattaccag
aactttgtggaccgttttgccgagtggccgatcaagattgctgaaatctcccgtttccgc
accgccaaagagcaggccgaagcactcaagggcctggccgatggcagcattgatatcatc
atcggtacccacaggctgatccagaaagacgtaaaatttaagaacttaggcctggcgatt
ctcgatgaagagcaccgctttggcgtgcggcaaaaagagcagatgaaagcgctgcgggcc
gaggtggatgtgctgacgctgaccgccacaccgattccgcgtacgctcagcatggcgatg
gaaggcttgcgcgaattttcagtgatttctacgccgccgcaaaaacgattggcgattaaa
accttccatacgccttattctgacggcattatccgcgaggcggtgatgcgtgaattcaag
cgcggtggccaagtctatttcctgcataacgaggtggataccatctatgtgatgaaggaa
aaactggaaaaaatcgtccccgaagcccgcattgccattggccacggccagttgcgcgag
cgcgagcttgagcatgtgatgcgcgatttttaccagcaacgcgccaacctgttattgtgt
accaccattgtcgaaaccggcattgatgtacccaccgccaacaccatgatcatcaacagg
gccgatatgtttggcctggcgcaattgcaccagttacgtggccgagtcggtcgtagccac
catcaggcttacacgtatttgttgacggatccgcaccgtaatatcacgccgcaagcgcaa
aaacggctggatgcgattcaactactcgaagacctgggcgcaggctttcatcttgccatg
cacgaccttgaaatccgtggggccggtgagttgctgggcgacagccagagtggtgaaatg
caggaaatcggctttaacctgtattcagagatgctcaatcacgctgttaaacagctcaaa
gccggtaaagagccagacctggatgcgcctttaggcgtcactaccgaaatcaacctgcat
acccctgctttgctacccaacaattattgcccggacgtgcacgagcggctggtgatttat
aaacgcctggccaactgcgaagacgatgacgcgctggacgcgatgcaggaagaactgata
gaccgttttggtttgctgcctgagcctggtgaagcgttgattgcttgccaccgcttgcgc
atcgcagctaaaccattggggattgtcaaaattgatgcttcggatgcggccattcagctg
caattcaaccccaaggcggatattgacccgatgaaactgattaatctgctgcaacgcgat
aaacgctgccgcatgaatggaccggataaattacgtgtcactgtgcaacttggtaatctc
aatcaccgtgtagaattagtgaaaacacttttgaaggaatttatgtaa
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