Martelella endophytica: TM49_01330
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Entry
TM49_01330 CDS
T03801
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mey
Martelella endophytica
Pathway
mey03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mey00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
TM49_01330
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mey03400
]
TM49_01330
Enzymes [BR:
mey01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
TM49_01330
DNA repair and recombination proteins [BR:
mey03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
TM49_01330
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AJY44631
UniProt:
A0A0D5LKF2
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Position
303233..305722
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AA seq
829 aa
AA seq
DB search
MAEADRLAEYEQRRDFSKTREPKRGGPKKAGKTLGFVVQKHDARRLHYDFRLEWDGALLS
WAVTRGPSDDPGEKRLAVRTEDHPLDYADFEGTIPKGHYGGGTVMVWDRGTWEPLHDPAE
GLKSGKLHFNLSGERMQGGWALVRMRRRSGEKRENWLLIKERDETASDTPDALTEKNLRS
VKTGRSLKGIESDKPPKKPSTRPAKAKAAESKSAKKMPAFRKPQLATLYDTAPEGEDWLH
ETKFDGYRCIAAIAGGKARLFTRSGKDWTEKYAALDGAFEVLGNETLLIDGEIMAADIPK
GQSAFSALQQALHDDGALVFYVFDILERGGKSLTEKPLSDRKAVLEQALAPLDPDGPVRL
STYITGDGSDILKQICKAGGEGIISKRADAPYSHSRTSTWRKVKCTKRQEFVIGGYSPSD
KKGRPFSSLLVGQFDEDGGFHYRGRVGTGFSEETLETLAEEFSARARKTSPFDDVPASIA
RKARWVTPELVAEVDFAEFTADGHIRHGAFLGLRDDKEAKTVAPEKSKASDAVKVAGIAI
SHPDRQLFGKAGISKGDLAEYYGRAGKRMLEASGERPFSLLRYPSGIADEGFFQKHAGKG
FPDELTEIDIEEKDGSTAQYLYTKKPAGFVAAAQFGTIEFHGWGSRVDRLERPDRLIFDL
DPDEGLGFAETKKAAFDMRDLLEELGLAATAMVTGGKGIHVTVPLRRTVSWDTLKMFAKT
FAHILAEREPERFTATMSKEKRKGKIFIDWLRNERGATAIMPYSVRAREGAPVATPVTWE
ELKPMKSAAAFTLPDMDKRLAAPCPYVKAFKEPQSLSAKVIDKLEKLAD
NT seq
2490 nt
NT seq
+upstream
nt +downstream
nt
atggctgaagccgaccgccttgccgaatatgaacagcgccgcgacttctcgaagacccgt
gagccgaagcgcggcgggccgaaaaaggccggcaagacgctcggtttcgtcgtccagaag
cacgatgcccgccgcctgcactacgatttccgcctcgaatgggatggcgcgctgctaagc
tgggcagtgacccgcggcccgagcgacgaccccggcgaaaagcgccttgccgtgcgcacc
gaagaccatccgctggattacgccgacttcgagggcacgatccccaaggggcattatggc
ggcggcacagtgatggtctgggacaggggcacatgggaaccactgcacgatccggccgaa
ggcctgaaatccggcaagctgcatttcaacctctccggcgagcggatgcagggcggctgg
gcgttggtgcgcatgcgccgccgcagtggcgaaaagcgcgaaaactggttgctgatcaag
gagcgcgacgagaccgcaagcgacacgcctgacgcactgaccgagaagaacctcaggagc
gtcaagacgggccggtcgctgaaggggatcgaatccgacaagccgccgaagaaaccttcg
acaaggcccgctaaggcgaaagccgccgagagcaaatcggcgaagaagatgcccgccttc
cggaaaccgcagctcgcgacgctttacgacaccgcgcccgaaggcgaggactggctgcac
gagaccaagttcgacggctaccgctgcatcgccgccattgccggcggcaaggcaaggctt
ttcacccgctccggcaaggactggacggagaaatatgccgccctcgatggcgccttcgag
gtgcttggcaacgagacgctgctgatcgatggtgagatcatggcggcggatatcccgaag
ggacaatcggccttctccgccctgcagcaggcgctgcacgacgacggcgcactggttttc
tacgtcttcgacattctcgaacgtgggggcaaatcgctgaccgagaagccgctttccgac
cgcaaggcggtgctggaacaggcgcttgcgcctctcgatcccgatggcccggtgcgactc
agcacctatatcaccggcgacggcagtgatatcctgaagcagatctgcaaagcgggaggc
gagggcatcatctcgaagcgggccgatgcgccttatagccacagccgcacgagcacttgg
cggaaggtgaaatgtacgaagcggcaggaattcgtcatcggcggctattcgccgtcggac
aagaaggggcgtccgttctcgtcgctgctggtgggccagttcgatgaggacggcggtttt
cactatcgcggtcgggttgggaccggcttttcggaggaaacgctggaaacgctcgccgaa
gagttttccgcgcgcgcccgcaagacctcgcccttcgacgatgtgccggcctcgattgcc
cgcaaggcgcgctgggtaacaccggaactggtggcggaggtcgattttgccgagttcacg
gctgacggccatatccgccacggcgcctttctcggcctgcgcgacgacaaggaggcaaag
acggtggcaccggagaaaagcaaggcaagcgatgcggtgaaggtcgccggcatcgccatc
tcccatcccgaccggcagcttttcggcaaggccgggatcagcaaaggcgacctcgccgaa
tattacggacgcgccggcaaacgcatgctggaggcgagcggcgagcggccgttttcgctg
ctgcgctatccttccggcatcgcggatgaaggctttttccagaagcacgccggcaagggc
tttccggacgaactcaccgagatcgatatcgaggaaaaggacggcagcacggcgcagtat
ctctatacgaagaagcctgcgggcttcgtcgccgccgcgcagttcggcacgatcgagttc
cacggctggggttcgcgcgtcgaccggctcgaacgaccggaccggctgatcttcgatctc
gatccggatgagggcctcggctttgcggaaacgaagaaggccgccttcgacatgcgcgac
ctgcttgaagaactcggcctcgccgccactgccatggtcaccggcggcaagggcatccat
gtcaccgtgccgctgcggcgcacggtgagctgggacacgctgaagatgtttgcaaaaacc
tttgcccatatcctcgccgaacgcgagccggagcgcttcaccgcgacaatgtcgaaggaa
aagcgcaagggaaagatcttcatcgactggctgcgcaacgagcgcggcgccaccgcgatc
atgccctattccgtccgcgcgcgagagggcgcgccggtggcgacaccggtgacctgggag
gagctgaagccgatgaaatccgccgccgccttcacccttcccgacatggacaagcggctt
gccgccccctgcccctatgtcaaagccttcaaggagccgcaatcgctttcggccaaggtc
atcgacaaactggagaagctcgccgattag
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