Methylobacillus flagellatus: Mfla_1748
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Entry
Mfla_1748 CDS
T00342
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfa
Methylobacillus flagellatus
Pathway
mfa03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfa00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mfla_1748
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfa03400
]
Mfla_1748
Enzymes [BR:
mfa01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mfla_1748
DNA repair and recombination proteins [BR:
mfa03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mfla_1748
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
MFD_D3
ResIII
UB2H
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABE50016
UniProt:
Q1H0H1
LinkDB
All DBs
Position
1875543..1878947
Genome browser
AA seq
1134 aa
AA seq
DB search
MQFSLPIPAPGQTSRINPLTPGTDSLALAQLATHRAETSAKAPIVVVTSNAFDAQRLLEE
IPWYAPQLRVHLLPDWETLPYDHFSPHPDLISERLATLYQISQNSCDIVLVPISTALLRL
PPKAYLAAHTFILKKGQTLDIEALRNQCANAGYHHVSQVMGPGEFSVRGGLIDLFPMGSA
LPYRLDLFDDEIETIRTFDVDTQRSLYPVADIRLLPAKEFPLDEAGIARFRQSFREMFEG
DPSRSRIYKDVSKGIASGGIEWYLPLFFEQTATLLDYVPADALLCLHGNLDLASQAFWHD
AQSRYRQLAHDPERPILKPETLLIKAEEFFSQSHAWARMQLSLDNDSKLPALEVERRSEQ
PLHKLKDYIRRFKGRILIAAESLGRRETMAQLFHDHGISYETSEDWQSFQAGTAPVMLGI
SPLHGGFRVDDITVITEAELYANTVRQQRRRDKEKQRNTEGMLKDLSELREHDPVVHEQH
GVGRYRGLVNIDFGEGETEFLLLEYAGDDKLYVPVSQLFLISRYSGGPPESAPLHRLGSG
HWEKAKKKALKQVRDTAAELLNLYAQRAARKGHAFKLGLHDYEAFAEGFPFEETADQLAA
IEAVISDMQSGRPMDRLVCGDVGFGKTEVALRAAFVAVMGGRQVAVLVPTTLLAEQHFHN
FSDRFADWPVKITEISRFRTAKEQAQALKGLEDGSIDIVIGTHRLIQKDVKFKNLGLVIL
DEEHRFGVRQKEQLKAMRAEVDVLTLTATPIPRTLSMAMEGLREFSVIATPPQKRLAIKT
FATHYSEGIIREAAMREFKRGGQVYFLHNEVDTIFVMKEKLEKILPEARIGIAHGQLRER
ELEHVMRDFYQQRFNLLLCTTIIETGIDVPTANTIIMNRADMFGLAQLHQLRGRVGRSHH
QAYAYLLTDPDRNITPQAQKRLDAIQLLEDLGAGFHLAMHDLEIRGAGELLGDSQSGEMQ
EIGFTLYSEMLSHAVKQLKAGKEPDLSAPLGVTTEINLHTPALLPNDYCPDVHERLVLYK
RLANCSDDDALDAMQEELIDRFGLLPEQGEALMACHRLRIAAKALGINKIDASDSAIQLH
FSPKADLDPTKLIALLQRDRRCRMNGPDKLRVTVQYPGIAQRADFIKNLLKELA
NT seq
3405 nt
NT seq
+upstream
nt +downstream
nt
atgcagttttccctgcccattccggcacccggccaaacgagccggatcaatcccctgacg
cccggcaccgatagcctggcactcgcacaactcgccacccaccgtgcagagacttctgcc
aaggcgcctatcgttgtggtcacctccaacgctttcgatgcacaacgcctactggaagaa
attccctggtatgcgccgcagctacgcgtgcacctgctgccggactgggaaaccttgccc
tacgaccacttctcgccgcacccggacctgatttccgagcggctggcaaccctgtaccag
atcagccagaacagctgcgacatcgtgctcgtgccgatatcgacagcactgttgcgctta
ccgcccaaggcctacctggcagcccatactttcatcttgaaaaagggacagaccctggac
attgaggccttgcgcaaccaatgtgccaatgccggctaccaccatgtcagccaggtcatg
ggtcccggggagttcagcgtgcgtggcgggctgatcgacctgttcccgatgggcagcgcc
ctgccttatcgtctggacctgttcgatgacgagatcgagactatccgtacgttcgatgtc
gatacccagcgcagcctgtatccggttgccgatatccgcttgctgccggccaaggaattt
ccactggatgaagccggtatcgcgcgcttccgccagagttttcgtgaaatgttcgaggga
gatccctcgcgcagccgtatttacaaggatgtttccaaaggcatcgccagtggcggtatc
gaatggtatctacccctgtttttcgaacagaccgcgacactgctggattatgtgcctgct
gacgccctgttgtgcctgcacggcaacctcgacctggcatcgcaggccttctggcatgat
gcgcaatcacgttaccgccagctggcgcatgaccccgagcgccccatcctcaagccagaa
accttgctgatcaaggctgaggagttcttcagccaaagccacgcctgggccaggatgcag
ctcagcctggataatgacagcaagcttccggcgctggaggtagagcgccgctcggagcag
cccctgcataaactgaaggactacatccgccgcttcaagggccgcatcctcattgccgca
gaaagcctgggacgccgcgaaaccatggcgcagctgtttcacgaccacggcatctcctat
gaaacctccgaggactggcaatccttccaggcaggcaccgctcctgtcatgctcggcatc
agtcccttgcatggcggtttcagggtcgacgacatcaccgtcattaccgaagccgagctc
tacgccaacactgtccgccagcagcgccgccgcgacaaggaaaagcagcgcaatacggaa
ggcatgctcaaggatctctccgagcttcgcgagcacgacccggtcgtgcatgaacagcac
ggggtaggtcgctaccgcggcctggtcaatatcgacttcggcgaaggcgaaaccgaattc
ctgttgctcgaatacgccggtgacgacaagctctacgtcccggtctcacagttgttcctg
atctcgcgctactccggcggcccgccggaatccgcgccgttgcaccgcctgggcagcggc
cattgggaaaaggccaagaagaaggccctcaagcaggtacgcgacaccgctgccgaactg
ctcaacctctacgcccagcgtgcggcgcgcaaaggccatgccttcaaactcggcctgcat
gactacgaggcatttgccgaggggtttcccttcgaggaaaccgccgaccagcttgccgcg
atcgaagccgtcatcagcgacatgcagtccggtcgtcccatggaccgactggtctgtggt
gatgtcggcttcggcaagacggaagtggccttgcgcgccgccttcgtcgccgtcatgggt
ggcaggcaggtagccgtgctggtgccgacaacgctattggcggaacaacatttccacaac
ttcagcgaccgctttgccgactggccggtcaagatcaccgaaatctcccgcttccgcacc
gccaaggaacaggcacaggcattgaagggcctggaggatggcagtatcgatatcgtcatc
ggtacccaccgcctaatccagaaagacgtcaagttcaagaacctcggcctggtcattctc
gatgaagaacaccgcttcggcgttcgccagaaggaacaactcaaggccatgcgcgccgag
gtggatgtcctgacgctgaccgccacaccgatcccacgtacattgtccatggccatggaa
ggcctgcgcgaattctcggtcatcgccacgccaccgcagaagcggctggcgatcaagacc
ttcgccacccattattccgaaggcatcattcgcgaggctgccatgcgcgagttcaagcgc
ggcggacaagtgtacttcctgcataacgaagtggacaccatcttcgtcatgaaggaaaag
ctggagaaaatcctgcccgaggcccgcatcggcatcgcccatggacagctgcgcgagcgc
gagctggaacatgtgatgcgcgacttctaccagcagcgcttcaacctgctgctgtgcacc
accatcatcgagaccggcatcgacgtgccaacggccaataccatcatcatgaaccgcgcc
gacatgttcggcctggcgcagctgcaccaattgcgcggacgcgtgggacgctcgcaccac
caggcctatgcctacctgctgaccgaccctgaccgcaatatcacgccgcaggcgcaaaaa
cgcctggatgcgatccagctgctcgaagatctgggagcgggcttccatctcgccatgcac
gacctggaaatccgtggcgcaggcgaactgttgggcgacagccaaagcggggaaatgcag
gaaatcggcttcaccctctactccgagatgctcagccacgccgtcaaacagctcaaggca
ggcaaggagccggatctttcggcccccctcggcgtcaccactgaaatcaaccttcatacg
cctgcattattgccgaacgattattgccccgacgtgcatgagcgcctggtgctctacaag
cgcctagccaactgcagcgacgacgatgcgctggacgccatgcaggaagagctgattgac
cgcttcgggctgttgccagaacaaggcgaggccctgatggcctgccatcgcctgcgcatt
gccgccaaggccctgggaatcaataagatcgacgccagcgactccgcgatccagctgcat
ttttcaccgaaagcggatctcgatccgaccaagctcatcgcgctcctgcaacgtgaccgc
cgctgccgcatgaacgggccggacaagctcagggttacggtacaatatcccggcattgcg
caacgtgccgactttatcaagaacctgttaaaggaactcgcctga
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