Micromonospora ferruginea: H1D33_09210
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Entry
H1D33_09210 CDS
T09299
Symbol
ligD
Name
(GenBank) non-homologous end-joining DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfeu
Micromonospora ferruginea
Pathway
mfeu03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfeu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
H1D33_09210 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfeu03400
]
H1D33_09210 (ligD)
Enzymes [BR:
mfeu01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
H1D33_09210 (ligD)
DNA repair and recombination proteins [BR:
mfeu03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
H1D33_09210 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
DNA_ligase_OB_2
DUF3331
Motif
Other DBs
NCBI-ProteinID:
QLQ38979
UniProt:
A0A7L6BAZ2
LinkDB
All DBs
Position
complement(4964976..4965914)
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AA seq
312 aa
AA seq
DB search
MPGAPLKPMLAMTGQLPAGAAWAYEFKWDGIRALADLSHGSRHFYARSGVEVTTAYPELL
NLAEQVDDALLDGEVVLFTDGQPSFTALAERMHVRNPAKAARLAATAPVTYMIFDLLRLD
GVDLTARPWRERRAALESLGLGAARWAVPPVFTDGPATWAAAGEHGLEGVMAKRADSVYR
PGVRSPDWVKVKLEVTGDFVVGGWRPGARRIGGLLVGVPGPDGRLVYRGRVGGGIGAAIE
RDLLRELEPLRADASPFAAGVPREDARGAIWVSPRVVVEVRYGQRTPDGRLRFPRILRLR
PDKPPEEVSDAG
NT seq
939 nt
NT seq
+upstream
nt +downstream
nt
gtgcccggcgcgccgctgaagccgatgctcgcgatgaccgggcagctcccggccggtgcc
gcgtgggcgtacgagttcaagtgggacggcatccgcgcgctcgccgatctctcccacggc
agccggcacttctacgcccggtccggggtcgaggtgaccaccgcgtacccggagctgctc
aacctggccgagcaggtcgacgacgcgctgctcgacggcgaggtggtgctcttcaccgac
gggcagccctcgttcaccgcgctggccgagcggatgcacgtgcgcaacccggccaaggcg
gcccggctggcggcgaccgcccccgtcacgtacatgatcttcgacctgttgcggctcgac
ggcgtggacctgaccgcccggccgtggcgggagcggcgggcggcgctggagtcgctcggg
ctcggggccgcccggtgggcggtgccgccggtcttcaccgacgggccggccacctgggcg
gcggccggcgagcacgggctggagggggtgatggccaagcgggccgactcggtctaccgg
cccggggtgcgctcgccggactgggtgaaggtgaagctggaggtcaccggcgacttcgtg
gtcggcggctggcggcccggcgcgcggcggatcggcgggctgctggtcggcgtgccgggg
ccggacgggcggctggtctaccgggggcgggtcggcggcgggatcggcgcggcgatcgag
cgggacctgctgcgcgagctggagccgctgcgcgccgacgcctcgccgttcgccgcgggg
gtgccgcgcgaggatgcccggggcgcgatctgggtatcaccccgggtggtggtggaggtc
aggtacggccagcgcaccccggacggccggctgcgcttcccgcggatcctgcgcctgcgc
ccggacaagccgcccgaggaggtctccgatgccggctga
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