Candidatus Methylacidiphilum fumarolicum: MFUM_2158
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Entry
MFUM_2158 CDS
T09357
Symbol
mfd
Name
(GenBank) Transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfh
Candidatus Methylacidiphilum fumarolicum
Pathway
mfh03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfh00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MFUM_2158 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfh03400
]
MFUM_2158 (mfd)
Enzymes [BR:
mfh01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MFUM_2158 (mfd)
DNA repair and recombination proteins [BR:
mfh03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MFUM_2158 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
TRCF
CarD_TRCF_RID
UvrB_inter
ResIII
RecG_dom3_C
Glyco_tran_WecG
UB2H
Motif
Other DBs
NCBI-ProteinID:
CAI9086470
LinkDB
All DBs
Position
MFUM:2114465..2117632
Genome browser
AA seq
1055 aa
AA seq
DB search
MAPSPSNHWNNNTIGIQGKKKEMTFSPTKWLNHPLLRQQHKRLIKGGNWSIECLPTSAQS
FFLASFIANSHLPTLVIAESIKKVNELAIGLECWGSPYIVFPEIEPVSMESLPDPLLMAE
RLRAAYSLLNFFSGAILTTELALEEPLPSPSLLQEKRFRIVPGKTTDRFALIERLIEAGY
ERVDTVDNRGQLAVRGSIVDFFSWDGVFPLRTEWEGNQIISLRQFHPITQRSFKPLEEAF
LSLINAEDISKGKASLYDYLPKMTTIFWSKAPEVAMPDIDIHFESHILLDAPKGDWFHQE
RRWELFLSQLTQWIEKKWEIVIFVNNEGEESRLKEILSNQGIGIESIFFSKSPLLKGFSW
PAAKLAILTDAEIFGRYQNQKICLRNQETNDALEKYLTGEISEQWKDGDYVVHLQHGICR
FRGIKSMDGTNSEMIELEFDQKAKLFVPIDQAYLISRYIGGTKKQPKLDSLGGTRWLRAK
IATEKAVSDLAERMLKINAEREVLEGFSFPKDDHWQREFEESFIYEETADQLKAIEETKR
DMESKRPMDRLICGDVGFGKTEVAIRAIFKAVMGGKQAALLAPTTVLAKQHFQTLSERFA
DYPIQTALLCRLIKNSEEKEILAGLKNGSIDVVIGTHRLLSADVAFKDLGLIVIDEEQRF
GVLQKEKWKDTFRLIDVLSLSATPIPRTLYLALAGARDMSLIETPPPNRYPIETIVSAYD
ERIIRQAIERELNRGGQVYFLHNRIRTIEKVASRIKSLLPSVKIAIGHGRMKKSELEEVM
ESFVNGQIDVLLATSIIENGLDIPNANTIIIDRADLFGLADLYQLRGRVGRSNQKAYAYL
LLPRDLFIQADAKKRIKAMQEHSQLGVGFQIALRDLEIRGAGNLLGTSQSGHIASVGFEL
YCKLLKKAVQRLQGKEIDTLTDCKVSLDFLLPEPGGGRHALAFIPFTYMERREERLQAYR
QLAEALSIGELEEIKKGWKDRFGAWPEPVENLFSITEIRLIGAAKGIERIESDQDKLKLM
RHREYLFTAQGKFPRLIESDTKTKIMQIKKWLEVF
NT seq
3168 nt
NT seq
+upstream
nt +downstream
nt
atggcaccttcaccatccaatcattggaacaataatactatcgggatccaagggaagaaa
aaagaaatgaccttttctcctaccaagtggttgaaccatcccttgttaagacaacaacac
aagcggttaataaaaggaggaaattggagcatcgaatgcttacccacttccgcgcaatcc
ttttttcttgcctcctttatagccaactctcatttgcccactttggtcatagcagaaagc
attaaaaaggtcaatgaattggccattggattggaatgttggggaagcccttacatagtc
tttcctgaaattgaacctgtgtcgatggaaagcttacctgatccattgttgatggccgaa
aggctaagagcagcatatagtctgctcaattttttttccggggctatcctgaccacagag
ttagctttagaagagcctctaccctctcctagtttattgcaagaaaagcgttttaggatt
gttcctgggaaaacgactgacagatttgctctgatcgagcggctcattgaagctggttat
gaaagagttgatacggtagacaaccgaggccaattagctgtccgaggatcgattgtagac
tttttttcttgggatggcgtctttcctttgagaacggaatgggaaggcaatcaaatcatc
tcgctaagacaattccatcctattacacaacgctcttttaagccccttgaagaagctttt
ctttctcttatcaatgctgaggacattagcaagggaaaagcatcgctttacgattacttg
cccaaaatgaccaccatattttggtcaaaggcaccggaagttgcgatgccagacatagat
atccatttcgaaagccatattttactggatgcccccaaaggtgattggttccatcaagaa
agacgatgggaattatttctatctcaactcactcaatggattgaaaaaaaatgggagatc
gtcatttttgttaacaatgaaggggaagaaagccgattaaaagaaattctatccaatcag
ggaattggtatcgaatcgatctttttttcaaaaagcccccttctcaaaggcttttcatgg
cccgcagcgaaacttgccatcctaaccgatgcagaaatttttggtaggtaccaaaatcag
aagatttgcttacgtaaccaagaaacgaatgatgcccttgaaaaatacttgactggggag
atctccgaacagtggaaagatggagattatgtcgtgcatttgcagcatggtatatgccgg
tttagaggaataaagagcatggatggaacaaacagtgaaatgatcgagcttgaattcgac
caaaaagctaagctcttcgttcctattgatcaagcttatctgatttctcggtatattgga
ggaaccaaaaaacagccaaaactcgattcgttaggtggcacaaggtggctacgagcaaaa
atcgctacagaaaaagcggtatcggatcttgccgaaagaatgcttaaaattaatgcagaa
agagaagttcttgaggggttctctttccccaaagacgaccattggcaaagagaatttgaa
gagtcttttatttatgaagagacagccgatcagctcaaagcaatagaagaaacaaaacga
gatatggaaagcaaacggccaatggataggctcatctgcggggatgttggatttggcaaa
acggaagttgccattcgggcaatcttcaaagctgtcatgggaggcaaacaagctgcgctg
ctggcgcctactactgttcttgcaaaacaacattttcaaacgctttctgaacgttttgct
gattatcccattcagaccgctttgctctgtcgattgataaaaaatagtgaagaaaaagaa
atacttgcagggcttaaaaacggatccattgacgtggtgattggaacgcacagactgctt
tctgctgacgtcgcatttaaagatcttggattaatcgtcattgacgaagaacaacgcttt
ggcgtgctccaaaaagaaaaatggaaagatacatttcgactcattgatgttctcagtctt
tcggcaacaccaatcccacgaacgctttatttagcattggctggagccagagatatgagt
ttaatcgaaactcctccccccaatcgttatcctatcgagacgattgtgagcgcctatgac
gaacgaataatacggcaagcaattgagagagaattaaatagaggaggacaggtgtatttt
cttcataatcgaatacgaaccattgaaaaagtagcctcaaggataaaatcgcttttgccc
tctgtaaaaattgccataggccatggaaggatgaaaaaaagcgagctagaagaagtaatg
gaaagttttgtgaacggacagatcgatgtgctgcttgccacaagcatcatagaaaacggc
ttggatattcccaatgctaacaccatcatcattgaccgagccgatctttttggtcttgcc
gacctctatcagttgagaggaagagtggggcgatctaatcaaaaagcctacgcttatctg
ttactcccaagggatttattcattcaagccgacgccaagaaaagaattaaagccatgcaa
gaacattctcaactaggtgtgggcttccagatagccttaagagatctagaaatacgaggc
gcaggcaatcttttaggcacctctcaaagtggtcatatcgcctctgttggatttgaactc
tactgcaaactactcaaaaaagcagtccaaagacttcagggtaaagaaatcgatacttta
actgattgtaaggtctctttagattttttacttcccgagccaggaggcggcaggcatgcc
ttagcttttattccatttacctatatggaaaggagggaagagaggctacaagcttacaga
cagctagctgaagcactcagcataggggagctagaagaaatcaaaaaaggctggaaagac
cggtttggtgcgtggcctgaacctgtagaaaaccttttttcgattactgaaatccgactc
attggagctgccaaaggcatagaacgaatcgaatcggaccaggataaattaaaactaatg
aggcatagggagtatttgtttacagcgcaaggtaaattcccacgcttgatcgaatctgat
acaaagactaaaataatgcagattaagaaatggttagaagtcttctaa
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