Mycolicibacterium flavescens: NCTC10271_00861
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Entry
NCTC10271_00861 CDS
T07767
Name
(GenBank) DNA ligase D/DNA polymerase LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mflv
Mycolicibacterium flavescens
Pathway
mflv03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mflv00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
NCTC10271_00861
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mflv03400
]
NCTC10271_00861
Enzymes [BR:
mflv01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
NCTC10271_00861
DNA repair and recombination proteins [BR:
mflv03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
NCTC10271_00861
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Big_4
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
VEG38936
LinkDB
All DBs
Position
1:923922..926180
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AA seq
752 aa
AA seq
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MKLTNPDKVLYPATGTTKAEVFDYYVGIAEAMIPHIAGRAVTRKRWPNGVEEPSFFEKQL
ASSAPDWLDRASVTHRSGTTTYPLIDTAEGLAWIAQQAALEVHVPQWRFVSKDDGQPTPG
PATRIVFDLDPGEGVSFRQLCEVAHEVRDLITDIGLTTFPLTSGSKGVHLYVPLEEPISS
QGASVLARRVAQQLEKTMPKRVTATMTKSVRTGKVFVDWSQNNGAKTTIAPYSLRGREHP
TVAAPRTWDEIEDPKLRHLNFDEVLDRVQEMGDLLAPLDEAVPVPDRLTTYRSMRDASKT
PEPVPNKPPKTGNNDKFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDTPSVNHLAVH
TEDHPLEYLTFHGEIPKGEYGGGKMIIWDTGTYEAEKFNDVSPDSTAEGGEVIINLRGKK
IDGRYALIQTDGKNWLAHRMKDQKRPQAGDLAPMLSTEGSVAKLKASQWAFEGKWDGYRV
IIDADRGRLTVRSRRGRDVTAEFPQFEAVAADLADHHVILDGEAVALDESGVPSFSEMQN
RARSTRVEFWAFDILYLDGRSLLRAKYSDRRKILEALAEGGGLIVPDPLPGDGPAAMEYA
RKKRWEGVVAKKRDSTYQPGRRSSSWIKDKVWNTQEVVIAGWRQGDGGRSSGIGSLMLGI
PADGGLEFVGRVGTGFTDKALAELKKTLKPLETDESPFNERLPRQDAKGVTFVRPELVGE
VRYSERTSDNRLRQPSWRGLRPDKEPGEVTWE
NT seq
2259 nt
NT seq
+upstream
nt +downstream
nt
gtgaagctgaccaacccggacaaggtgctgtacccggcgacgggcaccaccaaagcggag
gtgttcgactattacgtcggcatcgccgaggcgatgatcccgcatatcgcgggccgcgcc
gtgacccgcaagcgctggcccaacggtgtcgaggagccgtcgttcttcgagaagcaactc
gcctcgtcggcgccggactggttggaccgcgcgtcggtcacgcatcgctcggggacgacg
acctatccgctgatcgacaccgccgaaggtctggcctggatcgcgcagcaggccgcgctc
gaagtgcacgtcccgcagtggcggttcgtcagcaaggacgacgggcaaccgacgcccggc
cccgcgacccgcatcgtcttcgacctcgaccccggcgagggggtgtccttccgccagctc
tgcgaggtcgcccatgaggtgcgcgacctcatcaccgacatcgggttgaccaccttcccg
ctcaccagcggtagcaagggggtgcacctgtacgtcccgctcgaggaaccgatcagttcg
cagggtgcatcggttctcgcgcggcgggtcgcacaacagctcgagaagacgatgcccaaa
cgcgtgaccgcgacgatgaccaagagcgtgcgcaccggcaaggttttcgtcgactggagc
cagaacaacggcgccaagaccacgatcgcgccgtattcgcttcgcggacgcgaacatccg
acagtcgccgcaccacgcacctgggacgagatcgaggatccgaagttgcggcacctcaac
ttcgacgaggtgctcgaccgggtgcaggagatgggcgacctgctcgcaccgctcgacgag
gcggtaccggtaccggaccggctgaccacctaccgcagcatgcgcgacgcgtccaaaacc
cctgagccggtgccgaacaagccgccgaagacggggaacaacgacaagttcgtcatccag
gaacaccacgcccgacggctgcactacgacctgaggctcgaacgcgacggcgtgctggtg
agctgggcggttccgaagaacctgcccgacaccccgtcggtcaaccacctcgccgtccac
accgaggaccacccgttggagtacctcaccttccacggcgagatccccaagggcgagtac
ggcggcggcaagatgatcatctgggacaccggcacttatgaggccgagaagttcaacgac
gtatcacccgacagcaccgcggagggcggcgaggtcatcatcaacctgcgcggcaagaag
atcgacggccgctatgcgctgatccagaccgacggcaagaactggctcgcacaccgcatg
aaggaccagaagcgcccgcaagcaggtgacctcgcgccgatgctgtcaacggaaggctcg
gtcgccaagctcaaggcgagccagtgggcgttcgagggtaagtgggacggctaccgcgtg
atcatcgacgcggatcgcggcaggctcacggtgcgctcccgacgtggccgagacgtcacc
gccgagttcccccaattcgaggcggtggcagccgatctcgccgatcaccacgtgatcctc
gacggtgaggcggtcgcgctcgacgagtccggcgtgccgagcttctccgagatgcagaac
cgtgcacggtcgacccgcgtggagttctgggcgttcgacatcctctacctcgacggccgc
tccctgttgcgcgccaagtactccgaccgtcgcaagatactcgaggcgctggccgagggc
ggcggcctgatcgtcccggatccgttgcccggcgacggccccgcggcgatggagtacgcc
cgcaagaagcggtgggagggcgtggtcgcgaagaagcgtgactcgacctaccagccgggg
cggcggtcgtcgtcgtggatcaaggacaaggtctggaacacacaggaagtcgtgatcgcc
ggttggcgacagggggacggcggacgttcgagcgggatcggctcgctgatgctcgggatc
ccggccgacgggggcctggaattcgtgggccgcgtcggaaccggtttcacggacaaggcg
ctcgccgaactcaaaaagaccctcaaaccgctggagaccgacgagagcccgttcaacgaa
cggctgccgcgccaggacgccaagggtgtgacgttcgtgcggcccgaactcgtcggcgag
gtccgctacagcgaacgcacctcggataaccgtctgcgtcaaccgagttggcgtggcttg
cgacccgacaaggagcccggcgaggtcacctgggagtaa
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