Marinomonas foliarum: JSY38_03975
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Entry
JSY38_03975 CDS
T07165
Symbol
rnr
Name
(GenBank) ribonuclease R
KO
K12573
ribonuclease R [EC:
3.1.13.1
]
Organism
mfoi
Marinomonas foliarum
Pathway
mfoi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
JSY38_03975 (rnr)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mfoi03019
]
JSY38_03975 (rnr)
03016 Transfer RNA biogenesis [BR:
mfoi03016
]
JSY38_03975 (rnr)
Enzymes [BR:
mfoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.1 exoribonuclease II
JSY38_03975 (rnr)
Messenger RNA biogenesis [BR:
mfoi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Ribonucreases
JSY38_03975 (rnr)
Transfer RNA biogenesis [BR:
mfoi03016
]
Prokaryotic type
tRNA degradation factors
JSY38_03975 (rnr)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNB
CSD2
OB_RNB
S1
HTH_12
Motif
Other DBs
NCBI-ProteinID:
QRV24702
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Position
complement(854761..857340)
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AA seq
859 aa
AA seq
DB search
MSNKKVNDPHKQREASKYDNPVPSREFILEFLATQNKSMGHLELCKEFSLTGEDEIEALR
RRLIAMCRDNQMTSNQNDEYSPILESDLIEGYVQGNKEGHGFLLRQSDDDIFLSARQMQN
VMDGDKVKARLSGRSVKGRLDGVVVEVLERKHTQLVGRYYEESRTAFVTPENPRIAQDIL
ITTESGLTPAHGQYVLAEIVSYAERGKPAQGLVKKILGDFMAPGVEIEVAMHRYEIPNEW
PAAVEKQVKNFSTEVAEEDKAHRVDLRDTPFVTIDGEDARDFDDAVYCEKTPGGWKLFVA
IADVSHYVKKDTALDEEAIVRGNSVYFPGRVIPMLPEVLSNGLCSLNPDVDRLAMVAEIS
LTSKGKMRGFKFYEGIIRSHARLTYSKVAKMIADEPEEQGIELRERYASIVSHIDDLNGL
YHVLKGARDERGAMEFDTIETRMVFDENSKIEHIVPVERNDAHKLIEECMLCANVAAAEL
LIKADLPALFRVHEGPKDDRLLTLRTYLGLLGLELTGGTKPTPTDYAALSEAIKDRADAR
SIQTMMLRSMSQAVYQADNMGHFGLNYDAYTHFTSPIRRYPDLLVHRAIRYLIRGEGRPT
VRQAHRVAGSPELKERKIYGYNHADMDGLGDSCSVTERRADEATRDVEAWLKCQYVEQHL
GEPFDGVVTAVTSFGLFVELQGLFVDGLVHISGLGQDYFVHDMEHQAIVGERTGRVFRLG
DTLKVRVSNVNLEQRKIDLSLDQSSARPARKKVERTDQTELEMQLAQLPPVELGGRSKPK
SAAKVEGDKSKDAKSSKDGKESDGKAKKKRRSPASKGKRIRQKKSGTVSANGKPTTAATK
KPKKPKKPKKSNAKPKAKD
NT seq
2580 nt
NT seq
+upstream
nt +downstream
nt
ttgagtaataaaaaagttaacgatccccacaagcagcgagaagcgtctaagtacgataac
cccgtaccaagccgtgaattcattttagagtttcttgccacccagaataaaagcatgggt
catctagagttatgcaaagaattttcgctgactggcgaagatgaaattgaagccctccgt
cgccgtctcatcgctatgtgccgagacaatcaaatgaccagcaatcaaaatgacgaatac
tcgccgattttagagagtgacctgattgaaggttatgtccaaggcaataaagaaggtcat
ggtttcttgttgcgtcaaagcgatgacgatattttcctatctgcccgtcaaatgcagaac
gtgatggatggcgacaaggtaaaagcacgtctttctggacgtagtgttaaaggtcgctta
gatggtgtcgtggttgaagtgctagagcgtaagcacacgcaacttgtaggccgatattat
gaagaaagtcgcacggctttcgtgacaccagaaaacccgcgtatcgcacaagatatcttg
atcactacagaatcgggtttaacgccggctcatggtcaatatgtgttggcggaaattgtt
agctacgctgagcgcggtaaaccagctcagggtttagtgaagaaaattcttggcgacttt
atggcgccgggcgttgaaatagaagtggcgatgcaccgttatgaaattcctaacgagtgg
cctgcagcggttgaaaaacaagttaaaaacttcagcacagaagtggcagaagaagataaa
gcgcatcgtgttgatttgcgtgacactccgtttgttactattgatggcgaagatgcgcgt
gattttgatgacgccgtatattgtgaaaaaacaccgggtggctggaagctgtttgttgcc
attgccgatgtttctcattatgtgaaaaaagacacggcgttagatgaagaagccattgtt
cgtggtaactcggtttatttccctggtcgcgttattcctatgttgccagaagtactgtcg
aacggcttgtgttcattgaacccagatgttgaccgtttggctatggttgctgagatctct
ttgacatccaaaggcaagatgcgtggctttaagttttatgaaggcattatccgctctcat
gcgcgcttaacttacagcaaagtcgcgaaaatgatcgcggatgagccggaagagcaaggt
attgagttgcgtgagcgttacgcgtctatcgtgtcacacattgatgatttaaacggtttg
tatcacgtccttaaaggtgctcgtgatgagcgcggtgcgatggaattcgatactatcgaa
actcgcatggtgttcgacgaaaattctaagattgagcacattgttcctgtagaacgtaat
gatgcccataagctaatcgaagaatgtatgttgtgtgccaacgtcgccgcggcagagcta
ttgattaaggcggatttgccggctttgttccgtgttcacgaagggccaaaagacgaccgt
ttgttaaccttgcgtacctatcttggtttgttaggtttagaactgacgggcggcactaaa
ccaacgccgacggattacgcggcactttctgaagcgattaaagaccgagcggatgctcgt
agtattcagactatgatgctgcgttctatgtctcaggcggtatatcaagcggataatatg
ggccatttcggtttgaattatgacgcttatacgcacttcacgtcgccaattcgtcgttac
ccagatttgttagttcatcgtgcgattcgttatttgattcgtggcgaaggtcgtccgact
gtgcgtcaggcgcatcgtgtggcaggtagcccagagctgaaagaacgcaaaatctacggt
tacaaccacgccgatatggatggtttaggggattcttgttccgtgaccgaacgtcgtgca
gacgaagctacgcgtgatgttgaagcttggttgaaatgccaatacgttgagcagcatttg
ggcgaaccctttgacggtgttgtgaccgctgtgacctcgtttggtttgttcgttgagcta
caaggtttattcgttgatggcttggtacacatttctggtcttgggcaggattactttgtt
catgatatggaacatcaagcgattgttggtgagcgcacaggtcgtgtgttccgccttggc
gatacgttaaaagttcgcgtgtctaatgtgaacttggagcaacgtaagattgatttgagc
ttggatcaaagcagtgctcgtccagcacgcaaaaaagtcgaacgtaccgaccaaaccgag
ctagaaatgcaattggctcagttgccaccggttgaattgggtggtcgctctaaacccaag
tcagctgccaaagtagaaggtgataagtcgaaagacgctaagtcatcgaaagatggcaaa
gagtcggatggtaaggcgaagaaaaagcgtcggtcacctgcctctaaaggcaaacgtatc
agacagaaaaagtcgggtactgtgtcggcaaatggtaagccaactacggcggctaccaaa
aaaccgaaaaagcctaagaaaccgaaaaagagcaatgctaagccaaaagcaaaagattga
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