Marinomonas foliarum: JSY38_17625
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Entry
JSY38_17625 CDS
T07165
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
mfoi
Marinomonas foliarum
Brite
KEGG Orthology (KO) [BR:
mfoi00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
mfoi03016
]
JSY38_17625 (rnd)
Enzymes [BR:
mfoi01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
JSY38_17625 (rnd)
Transfer RNA biogenesis [BR:
mfoi03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
JSY38_17625 (rnd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
DUF4769
Motif
Other DBs
NCBI-ProteinID:
QRV23809
LinkDB
All DBs
Position
3803564..3804706
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AA seq
380 aa
AA seq
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MNDQDDALNIIWVADNESLASWCEYWAELPVIAVDTEFIRRTTYFPITGLIQISEGEKAV
LIDPLSIDEWEPLRDLMVNPSVMKVFHACSEDLDVFDRLLGVLPAPFYDTQIGEAYASAQ
WSLSYVKLIHEYLKIEVAKDETRSDWVQRPLTDAQKRYAALDVVYLAKVYPMQIARLEEK
SMLEWVMEDCESLKWQYQMNSDPEQNWDGVKTAWRLSPAGLTLLRLLFIWRDEQARKENV
PKGQILKDRTLWSLGKTLPTHNKAVSEAEELTGRQHRLYGDVILQNVALVNELSEDEYQL
PLEIPLPSQAGELTKSIKSFVRQKAEALNIAPEAMMKRKLLDPLVRHLFDGTEIDWQNPA
LTGWRRDIIVNPVLEKFKKS
NT seq
1143 nt
NT seq
+upstream
nt +downstream
nt
atgaatgatcaagatgatgctctgaatattatttgggttgcggacaatgaatcactggcg
agttggtgtgagtactgggcagaattacccgttatcgccgtcgatacagaatttattcgt
cgcacgacctattttccaattacggggctaatccaaattagtgaaggcgagaaagccgta
ctgattgatcctttgagcattgatgaatgggaaccacttcgtgatttgatggtgaaccct
tctgtgatgaaagttttccatgcttgttcggaagacttggatgtttttgatcgtttgttg
ggagtattgcccgcgccgttttacgatactcaaattggcgaggcctacgctagcgctcaa
tggtcattaagttacgtgaaacttatccatgagtacctgaaaattgaagtggcaaaagac
gaaacccgttctgattgggttcaacgacctttgaccgatgcgcaaaagcgttacgcagca
ttagatgttgtgtatctagccaaagtgtatccaatgcaaattgcccgattggaagaaaaa
agcatgcttgaatgggtcatggaagattgtgaatcattgaagtggcagtatcagatgaac
tctgatccagagcaaaattgggacggtgtgaaaaccgcatggcgcttgtcaccagcaggt
ttgacgctattacgcttgttgtttatttggcgtgatgagcaagctcgtaaagaaaatgtt
ccaaagggacagatactgaaagatcgtacattgtggtctttgggtaaaaccttgccgaca
cacaataaagccgtttctgaagcagaagaactaacaggtcgtcagcatcgtttgtacggt
gatgtgatcttacagaatgtggctctagtcaatgagctgtcagaagatgagtatcagttg
cctctggaaattcctttgccttcacaggcgggagagctgacgaaatcaatcaaatcgttt
gtccgccaaaaagcagaagcattaaatattgcaccagaagccatgatgaagcgtaaactg
ttggatcctctagtgcgtcatttgtttgatggtactgagattgattggcagaaccctgca
ctaactggctggcgtcgcgatattattgttaacccagtgctcgaaaaatttaaaaagtcc
taa
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