Microbacterium foliorum: DXT68_05195
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Entry
DXT68_05195 CDS
T05657
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mfol
Microbacterium foliorum
Pathway
mfol03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mfol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
DXT68_05195 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfol03400
]
DXT68_05195 (mfd)
Enzymes [BR:
mfol01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
DXT68_05195 (mfd)
DNA repair and recombination proteins [BR:
mfol03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
DXT68_05195 (mfd)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
CarD_TRCF_RID
TRCF
Helicase_C
ResIII
RecG_dom3_C
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
AXL13726
LinkDB
All DBs
Position
1148235..1151780
Genome browser
AA seq
1181 aa
AA seq
DB search
MRALEEASLFRDALTWAQTDADLGLVDGLDAPTLAGLLDKRRAAGHPAALLTVVPTGRRA
ESLAAALTAYIPDAEVVTFPAWETLPHERLSPSPDTVGQRLQTLRRIADWSGDHPLIVVA
SVRAALQPIAGNLGEIPPLDLRAGGRGHELERVVEQLIERAYSRVDMVSRRGEFAVRGGI
LDVFPAISEHPFRIEFFGDEIDQIRAFSVADQRSLPGAIDAVDLPPSRELLLTPDVRDRA
RALIAGFPAIAGMLEKMSEGIPVEGMESLLPAVSGPLKSLAEYLPEGSATAVVDPERSSA
RAITLGETNREFLDAAWSAATSGASAPIDLGAGDFLTIARLREVVRDRGGVWWRLSPFAM
GGEDAETIDATVIPSFHGNVDGAISFVDAKVAEGWRVVVIATGTGLVDRARDVLSDRGVA
ARVVTELNAAPDGGVATLVCGSVEAGFQIAEAKLAVLTDNEFYGRTIGGDQRVVKKLASR
RKNVVDPLQLTQGDYVVHNTHGIGRFVEMTKREVSTGGRNATKSVRDYLVLEYAPSKRGY
PGDKLFVPTDQLDSLSKYVGGEGPTLSKMGGSDWSQAKGKARKAVRDIAVELVKLYSARM
SAKGHAFGPDTPWQRELEEAFPFAETPDQLQTIDEIKADMERPIPMDRLLSGDVGFGKTE
VAVRAAFKAIQDGKQVAMLVPTTLLVKQHLETFTERFAGFPVKVRPLSRFQTDKEARLTL
DGLLDGTVDMVIGTHRILTDQVMFKDLGLMIIDEEQRFGVEHKDTLKKMKTNVDILAMSA
TPIPRTLEMAVTGIREMSTLATPPEDRHPILSFVGPRSDKQITAAIRREILREGQVFFVH
NRVQSIQRVAAQLAELVPEARIAVAHGQMGEHALEQVVDDYYERKFDVLVSTTIIETGLD
ISNANTIIIDRADKYGLSQLHQLRGRVGRGRERAYAYFLYDEMKPLSETAADRLQTIAVN
NDLGSGMQVALKDLELRGAGNLLGGEQAGHIAGVGFDLYLRMIGEAVATFRGEDVESGQE
LRLELPLDARIPEYYIDSERLRLEAYQKLSAASAATAKDDAIDLVIDELTDRYGAPPAEV
EGLIAVARLRRRAARAGLADVVVMGSNLRIAPARLEDSIQMRLRRLYPQAKLVSGGEALV
VPMPTVPAAVGVGLEPLQDAELLAWVGQLLTAIFPEPVPVA
NT seq
3546 nt
NT seq
+upstream
nt +downstream
nt
ctgcgcgccttggaagaggcctctctttttcgtgacgccctgacgtgggcccagaccgac
gccgatctcggcctggtcgacgggctcgacgcaccgacgctcgcggggctgctcgacaag
cggcgcgccgcagggcaccccgccgcgctgctcaccgtcgtgccgacggggcgacgggcc
gagagcctcgccgccgcgctcaccgcatacatccccgatgccgaggtcgtcacgttcccg
gcgtgggagacgctgccgcacgagcggctcagccccagccccgacacggtcggccagcgc
ctgcagaccctgcgccgcatcgccgactggtcgggtgaccacccgctgatcgtcgtggcg
tcggtgcgcgcggcgctgcagccgatcgccggcaatctcggcgagatccccccgctcgac
ctccgggcgggcggacgcggccacgagctcgagcgcgtcgtcgagcagctgatcgagcgc
gcctactcccgtgtcgacatggtctcgcgacgtggcgagttcgccgtgcgcggcggcatc
ctcgacgtcttccccgcgatctccgagcacccgttccgcatcgagttcttcggcgacgag
atcgatcagatccgagccttctcggtcgccgaccagcgctcgctgcccggggcgatcgac
gccgtcgacctcccgccgagcagggagctgctgctgacccccgacgtgcgcgatcgcgcc
cgcgcgctgatcgccgggttccccgcgatcgccggcatgctcgagaagatgtccgagggc
atccccgtcgaaggcatggaatcgctgctgcccgccgtctcaggacccctcaagtcgctc
gccgagtatctgcccgagggcagtgcgacggccgtcgtcgaccccgagcgctccagtgcc
agggcgatcacgctcggcgagaccaaccgcgagttcctcgacgcggcctggagcgcggcc
acctccggcgcctcggcccccatcgacctcggtgccggggacttcctcaccatcgcccgg
ctgcgcgaggtcgtccgcgaccgcggcggcgtctggtggcggctgagcccgttcgcgatg
ggcggcgaggatgccgagacgatcgatgcgacggtcatcccgtcgttccacggcaacgtc
gacggcgcgatctcgttcgtcgacgcgaaggtcgcggagggctggcgcgtcgtcgtcatc
gcgaccggcacgggactggtcgatcgcgcgcgcgacgtgctgtccgaccggggggtcgcc
gcccgcgtcgtgacagagctgaacgcggcccccgacggcggcgtcgcgaccctcgtctgc
ggatcggtcgaggccggtttccagatcgccgaggcgaagctcgccgtcctcaccgacaac
gagttctacggacgcacgatcggcggagaccagcgggtcgtcaagaagctcgcatcgcgg
cgcaagaacgtcgtcgacccgctgcagctcacgcagggcgactacgtcgtgcacaacacg
cacggcattggccgtttcgtcgagatgaccaagcgcgaggtctccaccgggggacgcaac
gcgaccaagtcggtgcgcgactacctcgtgctggagtacgcaccctcgaagcgcggctac
cccggcgacaagctcttcgtgccgaccgaccagctcgactcgctctcgaagtacgtgggc
ggcgaggggccgacgctctccaagatgggcggcagcgactggtcgcaggccaagggcaag
gcgcgcaaggcggtgcgcgacatcgccgtcgagctggtcaagctctactcggcccgcatg
agtgcgaaggggcacgcgttcggcccggacacaccctggcagcgcgagctcgaagaggcg
ttcccgttcgccgagaccccggatcagctgcagacgatcgatgagatcaaggccgatatg
gagcgcccgatcccgatggaccgtctgctctcgggcgatgtgggcttcggcaagaccgag
gtcgcggtgcgagcggcgttcaaggcgatccaggacggcaagcaggtcgcgatgctcgtg
ccgacgaccctcctcgtgaagcagcacctcgagaccttcaccgagcgcttcgccgggttc
ccggtgaaggtgcgtccgctgtcgcggttccagaccgacaaggaggcgcggctgaccctc
gacggcctgctcgacggcacggtcgacatggtgatcggcacgcaccgcatcctcaccgac
caggtcatgttcaaggacctcgggctgatgatcatcgacgaggagcagcgcttcggcgtc
gagcacaaggacacgctcaagaagatgaagacgaacgtcgacatcctcgccatgagcgcg
acccccatcccgcgcacgctcgagatggcggtgaccggcatccgcgagatgtcgacgctc
gcgacgccacccgaggaccggcatccgatcctctcgttcgtcggaccccgcagcgacaag
cagatcaccgcggcgatccgtcgcgagatcctccgcgaggggcaggtgttcttcgtgcac
aatcgcgtgcagtcgatccagcgcgtcgccgcgcagctcgcggagctcgtgccggaggcg
cgcatcgcggtcgctcacggtcagatgggcgagcatgcgctcgagcaggtcgtcgacgac
tactacgagcgcaagttcgacgtgctggtctcgacgacgatcatcgagaccggtctcgac
atctcgaacgccaacaccatcatcatcgaccgcgccgacaagtacggcctgagccagctg
caccagctgcgcggacgcgtcggtcgcggtcgtgagcgggcgtacgcgtacttcctgtac
gacgagatgaagccgctcagcgagaccgccgcggaccgtctgcagaccatcgcggtgaac
aacgatctcggctccggcatgcaggtggcgctcaaggacctcgagctgcgcggcgcgggc
aacctgctcggcggcgagcaggcgggtcacatcgccggcgtcggcttcgacctctatctg
cgcatgatcggcgaggccgtcgcgaccttccgcggcgaggacgtcgagtctggccaggag
ctgcggctcgagctccccctggatgcgcgcatccccgagtactacatcgacagcgagcgg
ctgcgcctcgaggcgtatcagaagctgtccgcggcatcggcggcgacggcgaaggacgac
gccatcgacctcgtgatcgatgagctcaccgaccgctacggcgccccgcccgccgaggtc
gagggactcatcgcggtcgcccgactgcgccggcgagccgcgcgcgcgggactcgccgac
gtcgtggtgatggggtcgaacctgcgcatcgccccggcccggctcgaggattccatccag
atgcgtctgcggcgcctgtacccccaggcgaagctggtctcgggcggcgaagcgctggtc
gtgccgatgcccaccgtgcccgccgcggtcggcgtcggactcgagccgctgcaggatgcc
gagctcctcgcctgggtcgggcagcttctcacggcgatcttccccgagcccgtcccggtc
gcctga
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