Microbacterium foliorum: DXT68_11225
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Entry
DXT68_11225 CDS
T05657
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfol
Microbacterium foliorum
Pathway
mfol03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfol00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DXT68_11225
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfol03400
]
DXT68_11225
Enzymes [BR:
mfol01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DXT68_11225
DNA repair and recombination proteins [BR:
mfol03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DXT68_11225
BRITE hierarchy
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Ortholog
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Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Motif
Other DBs
NCBI-ProteinID:
AXL12647
UniProt:
A0A0F0KV57
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All DBs
Position
2376129..2378108
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AA seq
659 aa
AA seq
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MVAEAQNVQIDGRRLRVTNLDKVVYPQTGTTKGEIIAYYTAIAPHLLPLLEGRPVTRKRW
VEGVGTADHPADSFFTKQLEPGAPEWIPRREIRHSEGPKEYPLVDDVPTLVWLAQVAAIE
LHVPQWRFAHDGSPGNPDRLVLDLDPGPGVGLAQCSEVARIARALLADIGLDPVPVTSGS
KGIHLYAALPGAQTSDEISAVVKEVARLIETEHPDLATSTMAKAARGGKVFLDWSQNNGR
KTTISPYSMRGRAQPWVAAPRTWDELEDPDLAQLDFATVMERAASGVDPIAALRPNPASS
ATAADKSASDRPVTAERLAPARHRARLSAAASAPASAAPASVSPMLAENGTPAIARGLSS
PSWVEVKWDGIRAIGTWADGRMLLHARSGTDITARYPELTADGAPFLPVGDAIVDGEIVA
FDRQGRPSFSLLQNRMHLTRPREIEREVVRTPIVFMVFDLLRLDGHDLSAMPLSQRRTLL
DDVIADLDAPVQVPPVFDDVDAALAASAEFGLEGVVVKDPASRYRPGQRSPSWLKLKHTR
TQEVVIVGIRPGRGDREATFGSLLLAVPDAGDLRYVGRVGTGFSDRMLRDLLARLAPLRI
DAAPLDGVPALDASDALWVEPEVVGEVEFANWTPDGVLRHSRWRGLRPDKSPAEVVVES
NT seq
1980 nt
NT seq
+upstream
nt +downstream
nt
atggttgcggaggcgcagaacgtgcagatcgacgggcgtcgactgcgcgtcaccaacctc
gacaaggtcgtgtacccccagaccggcaccaccaagggcgagatcatcgcctactacacg
gcgatcgcgccgcatctgctcccgctgctcgagggccgtccggtcacacgcaagcgctgg
gtcgagggcgtcgggaccgcggatcaccccgcagactccttcttcacgaagcagctcgag
ccgggggcgcccgaatggatcccgcggcgggagatccgccattcggagggccccaaggaa
tatccgctggtcgacgacgtgccgaccctcgtctggctcgcgcaggtcgccgcgatcgag
ctgcatgtgccgcagtggcgttttgcgcacgacggttcgccggggaaccccgaccgcctc
gtgctcgacctcgaccccggcccgggcgtcggcctcgcccagtgctccgaagtggcccgc
atcgcccgtgcactgctcgccgacatcggtctcgaccctgtgcccgtcaccagcggcagc
aagggcatccacctctacgccgccctgcccggtgcgcagaccagcgacgagatctccgcc
gtcgtcaaggaagtcgcccgtctcatcgagaccgagcaccccgacctcgccacgagcacc
atggccaaggccgcccgaggcggcaaggtgttcctcgactggagccagaacaacggcagg
aagaccaccatctcgccctactcgatgcgcgggcgcgcacagccgtgggtggccgcgccc
cgcacctgggacgagctcgaggaccccgacctcgcgcagctcgacttcgcgacggtgatg
gagcgggccgcatcgggcgtggatccgatcgccgcgctgcgcccgaacccggcctcgagc
gcgacggctgcggacaagtccgcatccgatcgacccgtcaccgccgagcgactggctccg
gcccgtcaccgcgcgagactgtccgcggccgcgagtgcgccggcatccgctgctccggcc
tcggtgtccccgatgctcgcggagaacggcacgccggcgatcgcccgcggcctcagctca
ccctcctgggtggaggtgaagtgggacggcatccgagcgatcggcacgtgggccgacgga
cggatgctgctgcacgcccgcagcggcaccgacatcaccgcccgatatcccgagctcacc
gccgacggcgcacccttcctccccgtcggcgacgcgatcgtcgacggcgagatcgtggcg
ttcgaccgacagggtcgccccagcttctcgctgctgcagaaccggatgcacctgacgcgt
ccccgcgagatcgaacgcgaagtggtgcgcacgccgatcgtgttcatggtcttcgatctg
cttcgtctcgacgggcatgacctcagcgcgatgcctctttcccagcggcgcaccctgctc
gacgacgtgatcgccgacctcgatgcgcccgtgcaggtgccgccggtgttcgacgacgtc
gatgccgcactcgcggccagcgcggagttcggtctggagggtgtcgtggtcaaggatccc
gcctcccggtaccggccggggcagcgctccccctcctggctcaagctcaagcacacccgc
acgcaggaggtcgtgatcgtcggcatccgcccgggcagaggtgaccgcgaggcgaccttc
ggctccctgctgctcgccgtgcccgatgccggcgacctccgctatgtcgggcgcgtgggc
acgggtttcagcgaccggatgctgcgagacctgctcgcccggctcgcaccgctgcgcatc
gatgcggcaccgctcgacggcgtgcccgcactcgacgcgtccgacgcgctgtgggtggag
cccgaggtggtcggcgaggtcgagttcgcgaactggacgcctgacggcgtgctccgccac
tcccgttggcgcgggcttcgtcccgacaagtcgcccgccgaggtcgtcgtcgagagctga
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