Mycolicibacterium fortuitum: XA26_13320
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Entry
XA26_13320 CDS
T04105
Symbol
ligD
Name
(GenBank) LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mft
Mycolicibacterium fortuitum
Pathway
mft03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mft00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
XA26_13320 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mft03400
]
XA26_13320 (ligD)
Enzymes [BR:
mft01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
XA26_13320 (ligD)
DNA repair and recombination proteins [BR:
mft03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
XA26_13320 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
RNA_ligase
DNA_primase_S
Thr_synth_N
Motif
Other DBs
NCBI-ProteinID:
ALI25184
UniProt:
A0A0N9XNX0
LinkDB
All DBs
Position
1374827..1377103
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AA seq
758 aa
AA seq
DB search
MERYERVRLTNPDKVLYPASSTTKAEVFDYYLSIAEVMLPHIAGRPVTRKRWPNGVAEAS
FFEKQLASSAPDWLERGTIVHKSGTTTYPIVNTREGLAWIAQQASLELHVPQWRFSSDGS
QGPATRIVFDLDPGEGVTMPQLCEVAQAVRELMSDIGLMTYPLTSGSKGLHLYVPLADPI
SSRGASVLAKRVAVQLEQAMPKLVTATMTRSLRAQKVFLDWSQNNAAKTTIAPYSLRGRD
YPTVAAPRTWDEIGDPDLRHLRFDEVLQRISDDGDLLAGLDDDAPVADKLTTYRSMRDAT
KTPEPVPRDIPVRGNNDRFVIQEHHARRLHYDLRLERDGVLVSWAVPKNLPDTTAVNHLA
VHTEDHPIEYLTFHGTIPKGEYGAGNMVIWDTGTYEAEKFRVPADPDDSDAPKGEVIFTL
NGNRIDGRYALIQTEGKNWLAHRMKDQSSAAPEPKDFAPMLATEGSVAKLKATQWAFEGK
WDGYRLLVEAEHGRLQLRSRRGRDVTAEYPQFEALAADLADHHVVLDGEAVALDDHGMPS
FREMQNRARSTRVEFWAFDILWLDGRSLLRAKYTDRRKLLEALAAGGGLIVPEQLAGDGP
EAMEHAREHKFEGVVAKKRDSTYQPGRRSASWIKDKIWNTQEVVIGGWRQGEGGRSSGIG
ALVLGVPGPHGLQFAGRVGTGFTEKELTKLKGMLKPLHTKESPFDKPLPKLDAKGVTFVR
PELVGEVRYSERTTDHRLRQPSWRGLRPDKAPDEVVWE
NT seq
2277 nt
NT seq
+upstream
nt +downstream
nt
atggagcggtatgaacgggttcggctgacgaaccccgacaaggtgctctaccccgcatcg
agcaccaccaaggccgaggtgttcgactactacctcagcatcgccgaggtgatgctgcct
cacatcgcgggccgcccggtgacccgaaagcgctggccgaacggggttgcggaggcgtcg
ttcttcgaaaagcagctggcgtcgtcggccccggactggcttgagcgcggcaccatcgtg
cacaagtccggcaccaccacgtacccgatcgtcaacacccgcgagggcctggcctggatc
gcgcagcaggcctcgctggaactgcatgtgccgcaatggcgattctcatctgacggcagt
caaggcccggccacccgcatcgtgttcgacctcgatccgggcgaaggcgtcaccatgccc
cagctgtgcgaggtcgcccaggctgtgcgtgaactgatgagcgatatcggcctgatgacc
tacccgctcaccagcggcagcaaggggctgcacctgtatgttccactggccgatccgatc
agctcccgcggcgcctcggtgctggccaagcgggtcgccgtgcaactcgaacaggcgatg
cccaaactcgtcaccgccaccatgacccgcagcctgcgcgcgcagaaggtgttcctggac
tggagtcagaacaacgcggccaagaccaccatcgccccgtactcgttacgtggccgcgac
tacccgaccgtcgccgcaccccgcacctgggatgagatcggagacccggatctgcgccat
ctgcgtttcgacgaagtgttgcagcggatttccgacgacggcgacctgctggccggcctg
gacgatgatgcaccggtagccgacaagctcaccacctaccggagcatgcgcgatgccacc
aagactcccgaacccgtgccccgtgacatcccggtgagggggaacaacgaccggttcgtc
atccaggagcaccatgcgcgacgcttgcactacgacctgcggctcgaacgcgatggcgta
ctggtgagttgggctgttcccaagaacctgcccgataccacggcagtgaatcaccttgcc
gtgcacaccgaagaccacccgatcgagtacctgacattccacggcaccatcccgaaggga
gagtacggcgccgggaacatggtcatctgggacaccggcacctacgaagcggagaagttc
cgtgtcccagccgatcccgacgattccgatgcgcccaagggcgaagtcatcttcaccctc
aacggcaaccgcatcgacggccgctatgcgctgatccagaccgagggtaagaactggttg
gcgcaccggatgaaggaccagtcctcggccgcacccgagcccaaggatttcgcgcccatg
ctcgccaccgagggatcggtggcgaagctcaaagccacgcaatgggcgttcgagggcaaa
tgggacggttaccgactgctggtcgaggccgagcacggacggctgcaactgcgttcgcgc
cgcgggcgcgatgtgaccgccgaatacccccaattcgaagcgctggccgccgatctcgcc
gaccaccacgtggtgctcgacggcgaggcggtggcactcgatgaccatgggatgccgagt
ttccgcgagatgcagaatcgggcccgctccacgcgggtcgagttctgggcgttcgacatc
ctgtggctcgacggccggtcattgttgcgtgccaagtacaccgatcggcgaaagttgttg
gaggcgttggccgccggtggcggcctgatcgtgcccgagcagttggccggtgacggcccc
gaggccatggagcatgcccgcgagcacaagttcgagggcgtcgtcgcgaaaaaacgggac
tcgacatatcaacccggccggcggtcggcgtcctggatcaaggacaagatctggaacacc
caggaagtggtgatcggcggctggcgccagggagaaggtgggcgcagcagcggcatcggt
gcactggtgttgggggtcccgggcccccacgggctgcagttcgccgggcgggtcggcacc
gggttcaccgagaaagagctgaccaagctcaaggggatgctaaagcccctgcataccaag
gaatcgcccttcgacaagccactgccgaagctcgacgccaaaggggtcacgttcgtccgg
cccgagctggtgggagaggttcgctacagcgaacgcaccaccgaccatcgactgcgccag
cccagctggcgcggcctgcggccggacaaagcgcccgacgaggtggtgtgggagtga
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