Mycolicibacterium fallax: MFAL_39480
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Entry
MFAL_39480 CDS
T06894
Symbol
ligD_2
Name
(GenBank) multifunctional non-homologous end joining protein LigD
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfx
Mycolicibacterium fallax
Pathway
mfx03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfx00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
MFAL_39480 (ligD_2)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfx03400
]
MFAL_39480 (ligD_2)
Enzymes [BR:
mfx01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
MFAL_39480 (ligD_2)
DNA repair and recombination proteins [BR:
mfx03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
MFAL_39480 (ligD_2)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
mRNA_cap_enzyme
Big_4
Motif
Other DBs
NCBI-ProteinID:
BBZ00482
UniProt:
A0A1X1R7X1
LinkDB
All DBs
Position
4076995..4079244
Genome browser
AA seq
749 aa
AA seq
DB search
MGARVARVTLTNAEKVLYPDTGTTKAAVFDYYTSIAEAMLPHIAGRPATRKRWPNGVDGT
SFFEKQLAASAPDWLHRGSIQHRSATTVYPILDTVESLAWIAQQAALEVHVPQWRFVTTV
PGPATRLVFDLDPGDGVAMAQLCTVARAVRDMMSDIGLPSFPLTSGSTGLHVYAPFTEPV
SSRGAAVLAKRVAQQLEAAMPDLVTATMTRSSRAGKVFIDWSQNSGSKTTVAPYSLRGTA
TPTVAAPRSWDELDDPDLRQLRFDEVLARFARDGDLLEGLDAAAAAPDRLGVYRSMRDGT
KTPEPVPAAAAPAGNNDTFVIHEHHARRLHYDFRLERDGVLVSWAIPKNLPTSPAVNHLA
VHTEDHPLEYGTFAGIIPAGEYGAGRVNIWDSGSYETEKFRDEGTGGEVIVTLHGQRISG
RYALIQTGGKNWLAHRMKDQPTPLPADLAPMLATPRSVAKLTAAQWAFEGKWDGHRLLVE
VDRGVLRLRSRTGRDVTAEFPQLQHLGADLADHRVLLDGEVVVTDDAGVPRFAALQARLR
ATAVQFWAFDVLALDGRSLLNAKYSDRRRVLETLGEAVNLTVPERIPGDGAEALAISRER
GWEGVVAKRWDSSYQPGRRSAAWLKDKNWRTQDVLIGGWSAGQGGRGGGIGALLMGVPGA
DGLDYVGRVGTGFTEKDLATLRDLLDPLRSDESPFRARLVGPEAAGVTFVTPTLVGEVRY
AERSADGRLRHASWRGLRSDREPSQVGWE
NT seq
2250 nt
NT seq
+upstream
nt +downstream
nt
atgggtgcacgggtagcccgggtcacgctgaccaacgccgagaaggtgctgtatccggat
acaggcaccacgaaggccgcggtgttcgactactacaccagcatcgccgaggcgatgctg
ccgcacatcgccgggcggccggccacccgcaaacgctggcccaacggtgttgacgggacg
tcgttcttcgaaaagcagctggccgcatcggcgccggactggctgcaccggggcagcatc
cagcaccgcagcgcgaccaccgtctacccgatcctggacaccgtcgaatcgctggcctgg
atcgcccagcaggccgcgctggaggtgcacgtgccgcagtggcggttcgtcaccaccgtg
cccgggccggccacccggctggtgttcgacctggatccgggcgacggcgtggcgatggcc
cagctgtgcacggtggcccgcgcggtgcgggacatgatgagcgatatcgggctgcccagc
ttcccgctgaccagcggcagcaccgggctgcacgtgtacgcgccgttcaccgagccggtc
agttcccggggcgccgcggtgctggccaagcgggtcgcgcagcaactggaggcggcgatg
cccgatttggtcaccgcgacgatgacccgaagcagccgggccggcaaggtgttcatcgac
tggagccagaacagcgggtcgaagaccaccgtggcgccgtattcgctgcgcggtacggcc
accccgacggtggccgcgccgcgcagctgggacgagctcgacgacccggacctgcggcaa
ctgcgctttgacgaggtgctggcccgattcgcccgcgacggcgacctgctggagggcctc
gacgccgccgccgcggccccggaccggctcggggtctaccggtcgatgcgcgacgggacc
aagacccccgagccggtgcccgcagcggccgcgccggccggcaacaacgacaccttcgtc
atccatgagcaccacgcccgtcggctgcactacgacttccggctggagcgcgacggggtg
ctggtgtcctgggcgatcccgaagaacctgccgacctccccggcggtgaaccacctggcc
gtgcacaccgaggaccacccgctggaatacggcaccttcgccgggatcatcccggccggc
gagtacggcgcgggccgggtgaacatctgggattccggcagctacgagacggagaagttc
cgcgacgagggcaccggcggcgaggtcatcgtcaccctgcacgggcagcggatctccggc
cggtacgcgctgatccagaccggcggcaagaactggctggcgcaccggatgaaggaccag
ccgaccccgctgcccgccgacctcgccccgatgctggcgacgccgcggtcggtggccaaa
ctgaccgccgcgcagtgggcgttcgagggcaagtgggatggccaccggctgctggtcgag
gtcgaccggggagtgctgcggctgcggtcgcgcaccggccgggacgtcaccgccgagttc
ccccagctgcagcatctgggcgccgacctggccgatcaccgggtgctgctggacggggag
gtggtggtcaccgacgatgccggggtgccgcggttcgccgcgctgcaggcccggctgcgg
gccaccgcggtgcagttctgggccttcgatgtgctggcgctggacggccgatcgctgctc
aacgccaagtactcggaccgtcgcagggtgctggaaaccctgggcgaagcggtgaatctg
accgtcccggaacggattcctggcgatggcgccgaggcgctggcgatctcccgggaacgc
ggctgggagggcgtggtggccaaacgctgggactccagctatcagcccgggcgccgttcg
gcggcctggctcaaggacaagaattggcggacccaggacgtgctgatcggtggctggagc
gccgggcagggcggccggggcggcgggatcggcgcgctgctgatgggcgtgccgggcgcc
gacggcctggactacgtcggccgggtcggcaccggcttcaccgagaaggacctggccacg
ctcagggacctgctggatccgttgcgcagcgacgagagcccgtttcgcgccaggctggtc
gggccggaggccgccggggtgacgttcgtgacgccgacgctggtcggcgaggtccgctac
gccgaacgctcggccgacggccggctgcggcacgccagctggcgggggctgcgcagcgac
cgggaaccgtcgcaggtcggttgggagtag
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