KEGG   Massilia forsythiae: HH212_24115
Entry
HH212_24115       CDS       T08391                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mfy  Massilia forsythiae
Pathway
mfy03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mfy00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    HH212_24115 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mfy03400]
    HH212_24115 (ligD)
Enzymes [BR:mfy01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     HH212_24115 (ligD)
DNA repair and recombination proteins [BR:mfy03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     HH212_24115 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_C DNA_ligase_A_M DNA_primase_S
Other DBs
NCBI-ProteinID: QJE02714
UniProt: A0A7Z2W0Z0
LinkDB
Position
complement(5758181..5760919)
AA seq 912 aa
MPDALEQYKSKRDFSITSEPAEGGRAGTDALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSFDTRDKRMAVHVEDHPISYADFEGTIPAHQYGAGKVIIWDKGTWEPVGDPRAGYA
KGEIKFAIHGHKLHGRWVLVRMKPRAGERQEAWLLIKERDDYARPAAEYSVIDAMPDSVK
DLPMPAGPGEQAAADAKLAELKAEDEKAGAGPAKPAKRRTAKATKEKAGEGAAAVAKDES
ADAAPAGAAPAKGRKKVAAKADGMPAGAVAAELPATLSPELATLVDGPPPQPEEWLYEIK
FDGYRMLARVQGDDVRLVTRNGNDWTGKLDLLHKELLRLRLPDGWYDGEIVVHDEHGKPN
FNLLQLAFDADSRAQIVYFLFDIPYFQGHDLRQVRLDARRPLLERALAHKASETVRFSAE
FGTDPGQLVVAACRIGLEGVIGKRRDSRYLTRRSPEWIKLKCGLRQEFVIGGFTDPQGAR
SGIGSLLLGYYDAEGVLRYAGHVGSGFNGASLRHLRDVLDAIETDADPFPPRAVPGRGKH
WVKPELVAEVSFSAWTVAGLIRHPVFQGLREDKPARSVVREHAGHVQDGGAAAAPDTVQA
DADADAAGSEAGAALPAGFKLTHGERVMDADSGVTKAGLARYYALVGPLMMAHLEGRPVS
LVRAPEGVGGELFFQKHVVDTRKMPGVIQMDRALDPEHPSMMQLAGVEGLLSAAQWNVVE
IHSQNATGAHYEKPDRIVFDLDPGEGVAWTAVQEAAQLMRAFLQELGLTPFLKTSGGKGL
HMVVPLKPRLDWDTVKDFSHAVVNHLAKTLPERFSGKSGARNRVGRVFIDYLRNGRGATT
VSAWSPRVRPGLGISVPVRWEELAGLTSGAHWTVGTVQARLEEGNAPWADYAESATTLTR
AMKVLGFKAAKK
NT seq 2739 nt   +upstreamnt  +downstreamnt
atgccagacgccctcgagcagtacaagtccaagcgcgatttttcgattacctccgaaccg
gccgaaggcggccgcgccggcaccgacgcgctgaccttcgtgatccagaagcactgggcc
accaggctgcactacgatttccgcctcgagctggacggcaccatgaaaagctgggcggtg
cccaagggcccgagcttcgatacccgcgacaagcgcatggcagtgcacgtcgaggaccac
ccgatctcgtacgccgatttcgagggcacgattccggcgcaccagtacggcgccggtaag
gtgatcatctgggacaagggcacctgggagccggtcggcgatccgcgcgccggctacgcc
aagggcgaaatcaagttcgccatccacggccacaagctgcacgggcgctgggtgctggtg
cgcatgaagccgcgcgccggcgagcgccaggaagcctggctgctgatcaaggaaagggat
gactacgcgcgcccggccgccgagtattcggtgatcgacgccatgccggacagcgtcaag
gacttgccgatgccggccgggccgggcgagcaggcggcggccgatgccaagctggcggaa
ctgaaagccgaagacgagaaagccggcgccgggccggccaagcctgccaagcgcaggacg
gccaaagcgacgaaggaaaaagcaggcgagggcgccgctgccgtcgcgaaggatgaatcg
gccgatgccgcgccagccggcgccgcacccgcaaagggtcgcaagaaggtcgccgccaag
gccgatggcatgcctgccggcgccgtcgccgccgagctgcccgcgaccctgtcgccggaa
ctggcgacactggtcgacggcccgcccccgcagccggaggagtggctgtacgagatcaag
ttcgacggctaccgcatgctggcgcgcgtgcagggcgacgacgtgcgcctggtcacccgc
aacggcaacgactggaccggcaagctcgacctcctgcacaaggaattgctgcgtctgcgg
ctgccggacggctggtacgacggcgagatcgtcgtgcacgacgaacacggcaaacccaac
ttcaacctgctgcagctggccttcgacgcggacagccgcgcgcagatcgtctacttcctg
ttcgacatcccgtatttccagggccacgacctgcgccaggtgcgcctggacgcgcgccgt
ccgctgctggagcgggcgctggcgcacaaggcatcggagacggtgcgcttttccgccgaa
ttcggcaccgatcccggccagctggtggtggcggcttgccgcatcggcctggaaggcgtg
atcggcaagcgccgcgattcgcgctacctgacgcgccgctcgcccgaatggatcaagctg
aaatgcggcctgcgccaggaattcgtgatcggcggctttaccgatccgcagggcgcgcgc
agcggcatcggctcgctgctgctggggtattacgacgccgagggcgtgctgcgctacgcc
ggccacgtcggcagcggcttcaatggcgcctcgctgcgccacttgcgcgacgtcctggac
gcgatcgagaccgacgccgacccgttcccgccgcgcgcggtgccgggacgcggcaagcac
tgggtgaagccggaactggtggccgaggtcagcttctcggcatggaccgtggccggcctg
atccgccatccggtattccagggcctgcgcgaggacaagccggcgcgcagcgtggtgcgc
gagcacgccgggcatgtgcaggacggcggcgcggcggccgcgccggacacggtccaggcg
gatgcggatgcggatgcggctggcagcgaagccggcgccgcgctgccggccggcttcaag
ctgacccacggcgagcgcgtgatggatgccgacagcggcgtcaccaaggccggcctggcg
cgctattacgcgttggtcgggccgctgatgatggcgcatctggaagggcggccggtgtcg
ctggtgcgcgcgcccgagggcgtgggcggcgaactgttcttccagaagcacgtcgtcgac
acgcgcaagatgccgggcgtgatccagatggaccgtgcgctcgaccccgagcatccgagc
atgatgcagctcgccggcgtcgagggcttgctgtcggcggcgcagtggaacgtggtcgag
atccatagccagaacgccaccggcgcgcattacgagaagccggatcgcatcgtgttcgac
ctcgatccgggcgagggcgtggcgtggacggcggtgcaggaagccgcccagctgatgcgc
gcctttctgcaggagctgggcttgacgcccttcctcaagaccagcggcggcaagggcctg
cacatggtggtgccgctcaagcccaggctggactgggacacggtcaaggatttctcgcac
gcggtggtgaaccacctggcgaagacgctgccggaacgcttctcgggcaagagcggcgcc
aggaatcgcgtcggccgcgtgttcatcgactacctgcgcaacgggcgcggcgccaccacg
gtgtcggcctggtcgccgcgcgtgcggccgggactgggcatctcggtgccggtgcgttgg
gaagagctggccggattgacgtcgggcgcgcactggaccgtcggcacggtgcaggcgcgg
ctggaagaagggaacgcgccgtgggcggattacgccgagagcgcgacgaccttgaccagg
gcgatgaaggtactggggttcaaggcagcgaagaagtag

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