Massilia forsythiae: HH212_24115
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Entry
HH212_24115 CDS
T08391
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mfy
Massilia forsythiae
Pathway
mfy03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mfy00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
HH212_24115 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mfy03400
]
HH212_24115 (ligD)
Enzymes [BR:
mfy01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
HH212_24115 (ligD)
DNA repair and recombination proteins [BR:
mfy03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
HH212_24115 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QJE02714
UniProt:
A0A7Z2W0Z0
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All DBs
Position
complement(5758181..5760919)
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AA seq
912 aa
AA seq
DB search
MPDALEQYKSKRDFSITSEPAEGGRAGTDALTFVIQKHWATRLHYDFRLELDGTMKSWAV
PKGPSFDTRDKRMAVHVEDHPISYADFEGTIPAHQYGAGKVIIWDKGTWEPVGDPRAGYA
KGEIKFAIHGHKLHGRWVLVRMKPRAGERQEAWLLIKERDDYARPAAEYSVIDAMPDSVK
DLPMPAGPGEQAAADAKLAELKAEDEKAGAGPAKPAKRRTAKATKEKAGEGAAAVAKDES
ADAAPAGAAPAKGRKKVAAKADGMPAGAVAAELPATLSPELATLVDGPPPQPEEWLYEIK
FDGYRMLARVQGDDVRLVTRNGNDWTGKLDLLHKELLRLRLPDGWYDGEIVVHDEHGKPN
FNLLQLAFDADSRAQIVYFLFDIPYFQGHDLRQVRLDARRPLLERALAHKASETVRFSAE
FGTDPGQLVVAACRIGLEGVIGKRRDSRYLTRRSPEWIKLKCGLRQEFVIGGFTDPQGAR
SGIGSLLLGYYDAEGVLRYAGHVGSGFNGASLRHLRDVLDAIETDADPFPPRAVPGRGKH
WVKPELVAEVSFSAWTVAGLIRHPVFQGLREDKPARSVVREHAGHVQDGGAAAAPDTVQA
DADADAAGSEAGAALPAGFKLTHGERVMDADSGVTKAGLARYYALVGPLMMAHLEGRPVS
LVRAPEGVGGELFFQKHVVDTRKMPGVIQMDRALDPEHPSMMQLAGVEGLLSAAQWNVVE
IHSQNATGAHYEKPDRIVFDLDPGEGVAWTAVQEAAQLMRAFLQELGLTPFLKTSGGKGL
HMVVPLKPRLDWDTVKDFSHAVVNHLAKTLPERFSGKSGARNRVGRVFIDYLRNGRGATT
VSAWSPRVRPGLGISVPVRWEELAGLTSGAHWTVGTVQARLEEGNAPWADYAESATTLTR
AMKVLGFKAAKK
NT seq
2739 nt
NT seq
+upstream
nt +downstream
nt
atgccagacgccctcgagcagtacaagtccaagcgcgatttttcgattacctccgaaccg
gccgaaggcggccgcgccggcaccgacgcgctgaccttcgtgatccagaagcactgggcc
accaggctgcactacgatttccgcctcgagctggacggcaccatgaaaagctgggcggtg
cccaagggcccgagcttcgatacccgcgacaagcgcatggcagtgcacgtcgaggaccac
ccgatctcgtacgccgatttcgagggcacgattccggcgcaccagtacggcgccggtaag
gtgatcatctgggacaagggcacctgggagccggtcggcgatccgcgcgccggctacgcc
aagggcgaaatcaagttcgccatccacggccacaagctgcacgggcgctgggtgctggtg
cgcatgaagccgcgcgccggcgagcgccaggaagcctggctgctgatcaaggaaagggat
gactacgcgcgcccggccgccgagtattcggtgatcgacgccatgccggacagcgtcaag
gacttgccgatgccggccgggccgggcgagcaggcggcggccgatgccaagctggcggaa
ctgaaagccgaagacgagaaagccggcgccgggccggccaagcctgccaagcgcaggacg
gccaaagcgacgaaggaaaaagcaggcgagggcgccgctgccgtcgcgaaggatgaatcg
gccgatgccgcgccagccggcgccgcacccgcaaagggtcgcaagaaggtcgccgccaag
gccgatggcatgcctgccggcgccgtcgccgccgagctgcccgcgaccctgtcgccggaa
ctggcgacactggtcgacggcccgcccccgcagccggaggagtggctgtacgagatcaag
ttcgacggctaccgcatgctggcgcgcgtgcagggcgacgacgtgcgcctggtcacccgc
aacggcaacgactggaccggcaagctcgacctcctgcacaaggaattgctgcgtctgcgg
ctgccggacggctggtacgacggcgagatcgtcgtgcacgacgaacacggcaaacccaac
ttcaacctgctgcagctggccttcgacgcggacagccgcgcgcagatcgtctacttcctg
ttcgacatcccgtatttccagggccacgacctgcgccaggtgcgcctggacgcgcgccgt
ccgctgctggagcgggcgctggcgcacaaggcatcggagacggtgcgcttttccgccgaa
ttcggcaccgatcccggccagctggtggtggcggcttgccgcatcggcctggaaggcgtg
atcggcaagcgccgcgattcgcgctacctgacgcgccgctcgcccgaatggatcaagctg
aaatgcggcctgcgccaggaattcgtgatcggcggctttaccgatccgcagggcgcgcgc
agcggcatcggctcgctgctgctggggtattacgacgccgagggcgtgctgcgctacgcc
ggccacgtcggcagcggcttcaatggcgcctcgctgcgccacttgcgcgacgtcctggac
gcgatcgagaccgacgccgacccgttcccgccgcgcgcggtgccgggacgcggcaagcac
tgggtgaagccggaactggtggccgaggtcagcttctcggcatggaccgtggccggcctg
atccgccatccggtattccagggcctgcgcgaggacaagccggcgcgcagcgtggtgcgc
gagcacgccgggcatgtgcaggacggcggcgcggcggccgcgccggacacggtccaggcg
gatgcggatgcggatgcggctggcagcgaagccggcgccgcgctgccggccggcttcaag
ctgacccacggcgagcgcgtgatggatgccgacagcggcgtcaccaaggccggcctggcg
cgctattacgcgttggtcgggccgctgatgatggcgcatctggaagggcggccggtgtcg
ctggtgcgcgcgcccgagggcgtgggcggcgaactgttcttccagaagcacgtcgtcgac
acgcgcaagatgccgggcgtgatccagatggaccgtgcgctcgaccccgagcatccgagc
atgatgcagctcgccggcgtcgagggcttgctgtcggcggcgcagtggaacgtggtcgag
atccatagccagaacgccaccggcgcgcattacgagaagccggatcgcatcgtgttcgac
ctcgatccgggcgagggcgtggcgtggacggcggtgcaggaagccgcccagctgatgcgc
gcctttctgcaggagctgggcttgacgcccttcctcaagaccagcggcggcaagggcctg
cacatggtggtgccgctcaagcccaggctggactgggacacggtcaaggatttctcgcac
gcggtggtgaaccacctggcgaagacgctgccggaacgcttctcgggcaagagcggcgcc
aggaatcgcgtcggccgcgtgttcatcgactacctgcgcaacgggcgcggcgccaccacg
gtgtcggcctggtcgccgcgcgtgcggccgggactgggcatctcggtgccggtgcgttgg
gaagagctggccggattgacgtcgggcgcgcactggaccgtcggcacggtgcaggcgcgg
ctggaagaagggaacgcgccgtgggcggattacgccgagagcgcgacgaccttgaccagg
gcgatgaaggtactggggttcaaggcagcgaagaagtag
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