Mycolicibacterium gadium: MGAD_31030
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Entry
MGAD_31030 CDS
T07053
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgad
Mycolicibacterium gadium
Pathway
mgad03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgad00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MGAD_31030 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgad03400
]
MGAD_31030 (mfd)
Enzymes [BR:
mgad01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MGAD_31030 (mfd)
DNA repair and recombination proteins [BR:
mgad03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MGAD_31030 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
LSDAT_prok
DUF1474
MFD_D3
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBZ18768
UniProt:
A0A7I7WSC0
LinkDB
All DBs
Position
complement(3144773..3148408)
Genome browser
AA seq
1211 aa
AA seq
DB search
MTASGINHVQTPIAGVVDLALRDPSLQKVADRAADKPADLTMVGPASARVYVASALASSS
PLLVVTATGREADDLTAELHGVFGDAVALFPSWETLPHERLSPGVDTVGARLMLLRRLAH
PDDERLGPPLRVIVTTTRSLLQPMAPDLAEIEPVTLTVGEDATFDKVIARLVDLAYTRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIDVDVLIAV
PCREVLLTDDVRARASDLAAEHPVIDNTVTGSVPDMLAKLSEGIPVDGMEALLPLLRPTD
LATLTAHLPSGTPVLICDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAMGAS
GFIDLDDARSAARDGGHPWWTLSQLSDESALEIDIRPAPSARGQQSNVIEIFAMLRAHVL
TGGHAAVVAPGTGTAHRIVEQLRESDTAAVCLEPGEDLKDGIVNVLKGPLHDGVVIPGAN
LVVITETDLTGNRIAATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG
GARREYLVLEYASAKRGGGSDRLYVPMDSLDQLSRYVGGESPTLSKLGGSDWTNTKTKAR
RAVREIAAELVSLYARRQASPGHAFGPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK
PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTQRMAGFPV
TVKGLSRFTHPAESRAVLEGMKDGSVDIVIGTHRLLQTGVMWKDLGLVVVDEEQRFGVEH
KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQV
AAALRREMLRDGQAFYIHNRVRSIDQAAAKVRALVPEARVAVAHGQMPEEQLERTVEGFW
NREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
EVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKTVLAPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAAADD
AAVAAVIDELVDRYGPLPEPARRLVAVARLRLLCKHYGVTEMSTVSEATLKLSPLQLVDS
QQLRLKRLYPSAAYRATTSTVQVPIPRAGDGVAAPRIRDLELVQMVADLLLALDGKPQGS
VDMISGFVSTV
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcggggatcaaccatgtccagaccccgatcgccggagttgtcgacctggcg
ctacgggatccttcgcttcagaaggtcgccgaccgcgccgccgacaaacccgccgatctc
accatggtcggacccgccagcgcgcgggtgtatgtggcgagcgcacttgcctcttcgagc
ccgctgctcgtcgtcaccgcgaccgggcgcgaggccgacgacctgaccgccgaactgcac
ggcgtattcggcgacgccgtcgcactgttcccatcctgggaaacgctgccgcacgagcgg
ctgtccccgggcgtcgacaccgtcggtgcacggctgatgctgctgcgccgattggcacac
ccggacgacgaacgcctcggcccgccgctgcgcgtgatcgtcacgaccacccggtcgctg
ttgcagccgatggcccccgacctggccgagatcgagccggtgaccctgaccgtcggcgag
gacgcgacattcgacaaagtgatcgcccggctggtcgacctggcctacacccgcgttgac
atggtcggcaagcgcggtgagttcgcggtgcgtggcggcatcctcgacgtgttcccgccg
accgctgagcaccccgtgcgcatcgagttctggggtgacgaggtgtcggagatgcggatg
ttctccgtcgccgatcagcgctccatccccgagatcgacgtcgacgtgctcatcgccgtg
ccatgccgcgaggtgctgttgaccgacgacgtccgcgcccgcgcctccgacctggctgcc
gagcacccggtgatcgacaacaccgtgaccggcagcgtgcccgacatgctcgccaagctg
tccgagggcatccccgtcgacggaatggaggcgctgctgccgctgctgcgtcccaccgac
ctggcgacgctgaccgcgcatctgccgtcgggcacgccggtgctgatctgcgacccggag
aaggtccgcacccgcgcggccgacctgatcaagacgggccgtgagttcctggaggcttcc
tggtcgacggcggcggtcggcggtgatgcaccgatcgacctcgaggcgatgggcgcgtcg
ggcttcatcgatttggatgacgcgcgctccgcggcccgcgacggcggccacccgtggtgg
acgctgagccagctgtccgacgagtccgcactcgagatcgacatccgcccggcgccgtcg
gcgcggggtcagcagagcaatgtcatagagattttcgcgatgctgcgcgcccacgtcctc
accggcgggcatgccgccgtcgtcgcgcccggcaccggcaccgcgcaccgaatagtcgaa
cagttgcgcgaatccgacactgcggcagtctgtttggagccgggcgaggatctgaaggac
ggaatcgtcaacgtgctcaaggggccgttgcacgacggtgtcgtgatcccgggcgccaat
ctggtggtgatcaccgagaccgatctgacgggcaaccggatcgccgccaccgagggcaag
cggttggctgccaagcggcgcaacgtcgtcgatccgctggcgttgaccgcgggcgatctg
gtggtgcacgaccagcacggcatcggccggttcgtcgagatgaccgagcgggtggtcggc
ggcgcccgacgcgagtacctggtgctcgagtacgcgtcagcgaaaaggggcggtggttcg
gaccggctgtacgtgccgatggactcgctggatcagctgtcgcgctacgtgggcggtgaa
tcaccgacgctgagcaagctcggcggcagcgactggacgaacaccaagacgaaggcccgc
cgggcggtccgcgagatcgcggccgagctggtctcgctgtacgccaggcggcaggcttcg
cccggacacgccttcgggcccgataccccgtggcaggccgagatggaggacgcgttcggg
ttcaccgagaccgtcgaccagctcacggccatcaccgaggtcaagggcgatatggagaag
cccgtcccgatggaccgcgtgatctgtggcgacgttggctacggcaagaccgagatcgcg
gtgcgggcggcgttcaaggcagtccaggacggcaagcaggtcgcggtgctggtgccgacg
acgctgctcgccgaccaacatctgcagacgttcacccagcgcatggccggctttcccgtc
acggtgaagggtctgtcccggttcacccaccccgccgagtcccgcgcggtactcgaaggc
atgaaggacggctcggtcgacatcgtgatcggcacccaccggctgttacagaccggtgtc
atgtggaaggacctgggcctggtcgtcgtcgacgaagaacagcggttcggtgtcgagcac
aaggaacacatcaagtcgatgcgcacccacgtcgacgtgctgaccatgagcgccaccccg
attccgcgcacgctggagatgagcctggccggcatcagggagatgtcgacgatcctcacc
ccgcccgaggagcgctatccggtgctgacgtacgtcggcccgcaggacgacaagcaggtc
gccgcggcgctgcgccgcgagatgctgcgcgacgggcaggctttctacatccacaaccgg
gtgcgctcgatcgaccaggccgcggcgaaggtgcgcgcgctggtccccgaggcccgcgtc
gccgtcgcgcacggccaaatgcccgaggagcagctggagaggaccgtcgagggcttctgg
aaccgcgagttcgacatcctcgtgtgcaccacgatcgtcgagaccggcctggacatctcc
aacgccaacacactgatcgtcgagcgggccgacacattcggcctgtcgcaactgcatcag
ctgcgaggacgggtgggccgcagccgcgaacgcggttacgcgtatttcctctatccgccg
gaggttccgctcaccgagaccgcgtacgaccggctggccacgatcgcgcagaacaacgaa
ctcggcgccggaatggcggtggcgctgaaggacctcgaaatccgcggcgccggaaacgtt
ctcggtgctgagcagtccggtcacgtcgccggcgtcggtttcgacctgtacgtgcggctg
gtcggtgaggccgtcgaggcctatcgcgccgcagcggacgggaaaacggttctggcgcct
gaagaaccgaaggatgtgcgcatcgatctgccggtcgacgcgcatctgccgccggactac
atcggcagcgaccgattgcggttggaggcctaccgcaggctggcggcggcggccgacgat
gccgcggtcgccgcggtgatagacgagctcgtcgaccggtacggcccgctgcccgaaccc
gcgcgtcggttggtcgcggtggcgcggctgcgattgctctgtaagcactatggcgtgaca
gagatgagcacggtgtcggaagccacgctgaagctgtcgccgttgcagttggtggattcg
cagcagctgcggctcaagcggctctacccgagtgcggcgtaccgcgcgacgacgtcgacg
gtgcaggtacccataccccgtgcgggtgatggtgtcgccgcaccgcggatccgcgacctc
gaactggtacagatggtcgccgacctgctcctggccttggacggaaagccgcaggggagc
gtcgacatgatttctggcttcgtttcgacggtctaa
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