Mycobacterium gallinarum: MGALJ_33080
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Entry
MGALJ_33080 CDS
T07342
Symbol
mfd
Name
(GenBank) transcription-repair-coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgau
Mycobacterium gallinarum
Pathway
mgau03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgau00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
MGALJ_33080 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgau03400
]
MGALJ_33080 (mfd)
Enzymes [BR:
mgau01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
MGALJ_33080 (mfd)
DNA repair and recombination proteins [BR:
mgau03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
MGALJ_33080 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
UvrB_inter
TRCF
Helicase_C
CarD_TRCF_RID
ResIII
UB2H
LSDAT_prok
MFD_D3
DUF1474
DUF3638
Motif
Other DBs
NCBI-ProteinID:
BBY93639
UniProt:
A0A9W4FG39
LinkDB
All DBs
Position
complement(3383686..3387321)
Genome browser
AA seq
1211 aa
AA seq
DB search
MTASGINHVQTPIAGVVDLALRDPSLQKIADRAADKPADLAMVGPASARVYVASALASAG
PLLVVTATGREADDLTAELRGVFGDAVALFPSWETLPHERLSPGVDTVGARLMLLRRLSH
PDDERLGPPLRVVVTTTRSLLQPMAPDVAEIEPVTLTVGQEATFDQVIARLVDLAYTRVD
MVGKRGEFAVRGGILDVFPPTAEHPVRIEFWGDEVSEMRMFSVADQRSIPEIDVDVLIAV
PCREVLLTDDVRIRAFELAAEHPVIDNTVTGSVPDMLAKLSEGIPVDGMEALLPLLRPTD
LATLTAHLPAGTPVLICDPEKVRTRAADLIKTGREFLEASWSTAAVGGDAPIDLEAMGAS
GFIELDDARSAARDGGHPWWTLSQLSDESALEIDIRPAPSARGQQSNVTEIFAMLRAHVL
TGGHAAVVAPGTGTAHRIVEQLRESDTAAVCLEPGEDLKDGIVNVLKGPLHDGVVIPGAN
LVVITETDLTGNRVAATEGKRLAAKRRNVVDPLALTAGDLVVHDQHGIGRFVEMTERVVG
GARREYLVLEYASSKRGGGSDRLYVPMDSLDQLSRYVGGESPTLSKLGGSDWTNTKTKAR
RAVREIAAELVSLYAKRQASAGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKGDMEK
PVPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTQRMAGFPV
TVKGLSRFTDPAESRAVLEGMKDGSVDIVIGTHRLLQMGVMWKDLGLVVVDEEQRFGVEH
KEHIKSMRTHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPQDDKQI
AAALRREMLRDGQAFYIHNRVRSIDQAAAKVRALVPEARVAVAHGQMPEEQLERTVEGFW
NREFDILVCTTIVETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
EVPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGAEQSGHVAGVGFDLYVRL
VGEAVEAYRAAADGKTVLAPEEPKDVRIDLPVDAHLPPDYIGSDRLRLEAYRRLAAAADD
AAVDAVIDELVDRYGPLPEPARRLIAVARLRLLSRHYGVTEMSTVSEATLKLSPLQLVDS
QQLRLKRLYPSAAYRATTSTVQVPIPRAGGGVAAPRIRDLELIQMVADLLLALDGKPQGS
VDVISGSISTV
NT seq
3636 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcatcggggatcaaccatgtccagaccccgatcgccggagttgtcgacctggcg
ctacgggatccttcgcttcagaagatcgccgaccgcgccgccgacaaacccgccgatctc
gccatggtcggacccgccagcgcgcgggtgtatgtcgcgagcgcactcgcctcggcgggc
ccgctgctcgtcgtcaccgcgaccgggcgcgaagccgacgacctgaccgccgaactgcgc
ggcgtattcggcgacgccgtcgccctgttcccgtcctgggaaacgctgccgcacgagcgg
ctgtctccgggcgtcgacaccgtcggtgcacgcctgatgctgctgcgccggctttcgcac
ccggacgacgaacgcctcggtccgccgctgcgcgtcgtcgtcacgaccacccggtcgctg
ttgcagccgatggcccccgacgtggccgagatcgagccggtgacactgaccgtcggccag
gaggcgacattcgatcaagtgatcgcccggctggttgatctggcctacacccgcgtcgac
atggtcggcaagcgaggtgagttcgcggtgcgcggcggcatcctcgacgtgttcccgccg
accgccgagcacccggtgcgcatcgagttctggggtgacgaggtctccgagatgcggatg
ttctccgtcgccgatcagcgctccatccccgagatcgacgtcgacgtgctcatcgccgtg
ccctgccgcgaggtgctgctgaccgacgacgtccgcatccgggccttcgagttggccgcc
gagcacccggtgatcgacaacaccgtgaccggcagcgttcccgacatgctcgccaagctg
tccgagggcattcccgtcgacgggatggaggcgctgctgccgctgctgcgccccaccgac
ttggcgacgctgaccgcgcatctgccggcgggcaccccggtgctgatctgcgacccggag
aaggtccgcacccgcgcggccgacttgatcaagacgggccgcgagttcctggaggcctcg
tggtcgacggcggcggtcggcggtgatgcaccgatcgacctcgaggcgatgggggcgtcg
ggcttcatcgagttggatgacgcgcgctcggcggcccgcgacggcggccacccgtggtgg
acgctgagccagctgtccgacgagtcggcactcgagatcgacatccgtccggcgccgtcg
gcgcgaggacagcagagcaatgtcacagagatctttgcgatgctgcgcgcccacgtcctc
accggcgggcatgccgccgtcgtcgcgcccggcaccggcaccgcgcaccgcattgtcgaa
caattgcgcgaatccgacacggcggcagtctgtttggagccgggcgaggatctgaaggac
gggatcgtcaatgtgctcaaggggccgctgcacgacggtgtcgtgatcccgggcgccaat
ctggtggtgatcaccgagaccgacctgacgggcaaccgggtcgctgccaccgagggcaag
cggctggccgccaagcggcgcaacgtcgtcgatccgctggcgctgaccgcgggcgatctg
gtggtgcacgaccagcacggcatcggccggttcgtcgagatgaccgagcgggtggtcggc
ggcgcacgccgcgagtacctggtgctcgaatatgcgtcgtcgaaacggggcggcggctcg
gaccggttgtacgtgccgatggactcgctggatcagctgtcccgctacgtcggcggtgag
tcgccgaccttgagcaagctcggcggcagcgactggacgaacacgaagacgaaggcccga
cgcgcggtgcgcgagatcgccgccgagctggtctcgctgtacgccaagcggcaggcctcg
gccggtcacgcgttcgcccccgacaccccgtggcaggccgagatggaggacgcgttcggg
ttcaccgagaccgtcgaccagctcaccgccatcaccgaggtcaagggcgacatggagaag
ccggtcccgatggaccgggtgatctgtggtgacgtcggctacggcaagaccgagatcgcg
gtgcgggcggccttcaaggcggtccaggacggcaagcaggtcgcggtgctggtgccgacg
acgctgctggccgaccagcatcttcagacgttcacccagcgcatggccggcttcccggtc
accgtgaagggcctgtcccggttcaccgatcccgccgagtcgcgcgcggtgctcgagggc
atgaaggacggctcggtcgacatcgtgatcggcacccaccggctgttgcagatgggcgtg
atgtggaaagacctcggcctggtcgtggtcgacgaggagcagcggttcggcgtcgagcac
aaggagcacatcaagtcgatgcgcacccacgtcgacgtgctgaccatgagcgccacccca
attccgcgcacgctggagatgagccttgccggcatcagggagatgtcgacgatcctcacc
ccgcccgaggagcgctatccggtgctgacgtacgtcggcccgcaggacgacaagcagatc
gccgcggcgctgcgccgcgagatgctgcgcgacgggcaggctttttacatccacaaccgg
gtgcgctcgatcgaccaggccgcggcgaaggtgcgcgcgttggtgcccgaggcccgcgtc
gccgtcgcgcacgggcaaatgcccgaggagcagctggagaggaccgtcgagggcttctgg
aaccgcgagttcgacatcctcgtgtgcaccacgatcgtcgagacgggcctggacatctcc
aacgccaacacgctgatcgtcgagcgggccgacacattcggcctgtcgcaattgcaccag
ctgcgagggcgggtgggccgcagccgcgaacgcggttacgcgtatttcctttatccgccg
gaggttccgctcaccgagaccgcatacgaccggctggccacgatcgcgcagaacaatgaa
ctcggcgccggaatggcggtggcgctgaaggatctcgaaatccgcggcgccggaaacgtt
ctcggtgctgagcagtccggtcacgtcgccggcgtcggtttcgacctgtacgtgcggctg
gtcggcgaggccgtcgaggcctaccgagccgcagcggatgggaaaacggttctggcgcct
gaggaaccgaaggatgtgcggatcgatctgccggtcgacgcacatctgcccccggactac
atcggcagcgaccgattgcggttggaggcctaccgcagactggcggcggcggccgacgat
gccgcggtcgacgcggtgatagacgagctcgtcgaccggtacggcccgctgcccgaaccc
gcgcgtcgcttgatcgcggtggcccggctgcgactgctgagccggcattacggggtcacg
gaaatgagcacggtgtcggaagccacgctgaagctgtcgccgttgcagttggtggattcg
cagcagctgcggctcaagcggctctacccgagtgcggcgtaccgcgcgacgacgtcgacg
gtgcaggtccccataccccgtgcgggtggcggtgtcgccgcgccgcggatccgtgacctc
gaactgatacagatggtcgccgacctgctcctggccctggacgggaagccacagggcagc
gtcgacgtgatttctggctcgatttcgacggtctaa
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integrated database retrieval system
