Marinobacterium iners: CFI10_01195
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Entry
CFI10_01195 CDS
T07136
Symbol
rpoC
Name
(GenBank) DNA-directed RNA polymerase subunit beta'
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
mgeo
Marinobacterium iners
Pathway
mgeo03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
mgeo00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
CFI10_01195 (rpoC)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
mgeo03021
]
CFI10_01195 (rpoC)
03400 DNA repair and recombination proteins [BR:
mgeo03400
]
CFI10_01195 (rpoC)
Enzymes [BR:
mgeo01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
CFI10_01195 (rpoC)
Transcription machinery [BR:
mgeo03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
CFI10_01195 (rpoC)
DNA repair and recombination proteins [BR:
mgeo03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
CFI10_01195 (rpoC)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
Peptidase_M23
Motif
Other DBs
NCBI-ProteinID:
QSR33617
LinkDB
All DBs
Position
251977..256206
Genome browser
AA seq
1409 aa
AA seq
DB search
MKDLLNLLKSQGQSEEFDSIRVSLASPDMIRSWSYGEVKKPETINYRTFKPERDGLFCAK
IFGPVKDYECLCGKYKRMKHRGVICEKCGVEVTQTKVRRERMAHIELASPVAHIWFLKSL
PSRIGLMLDMTLRDIERVLYFESFVVIDPGMTTLERGQMMNDEQYFEALEEFGDDFDARM
GAEAIKELLASIDLEEECQQLREELPQTNSETKIKKLSKRLKLMEAFLKSGNDPGWMIME
VLPVLPPDLRPLVPLDGGRFATSDLNDLYRRVINRNNRLKRLLDLNAPDIIVRNEKRMLQ
ESVDALLDNGRRGRAITGSNKRPLKSLADMIKGKQGRFRQNLLGKRVDYSGRSVIVVGPY
LRLHQCGLPKKMALELFKPFIFSKLELRGHATTIKAAKKMVEREEPLVWDILDEVIREHP
VLLNRAPTLHRLGIQAFEPVLIEGKAIQLHPLVCAAYNADFDGDQMAVHVPLTIEAQLEA
RALMMSTNNILSPANGEPIIVPSQDVVLGLYYMTRERINAKGEGMIFSDIKEVQRAHGAG
QVHLQARIKVRIPEVIRDIEGNVEERHELQDTTVGRAMLFDIVPDGLPFELVDQAMKKKS
ISRLLNEAYRRCGLKDTVIFADQLMYMGFRQATMSGASIGVNDFEIPAEKVEIIAEADKE
VKEIERQFADGLVTQGEKYNKVIDIWSRANELLAKKMMDNLKVDVVIDAEGNKVEQESFN
SVYMMADSGARGSAAQIRQLSGMRGLMAKPDGSIIETPIVANFREGLNVLQYFISTHGAR
KGLADTALKTANSGYLTRRLVDVAQDVVITEPDCGTDKGVLVQPMIEGGDVIVTLGERVL
GRVVAQDVLDPSGKETLIEAGTLIDETWVYRLENDEKYSGIDEILVRSAITCEAQVGICS
NCYGRDLGRGHLVNRGEAVGVIAAQSIGEPGTQLTMRTFHIGGAASRAAAVDNIQVKNGG
EIRLHNLKYVERTDGNLVATSRSGEVGVTDEHGRERERYKLPYGAIIKVRDGSKVDAGAV
VANWDPHTHPIVTEVAGRIQYVGMEDGITIKRQTDELTGLSTIEILDGKDRPQAGKDIRP
MVKLVDEQGNDVFHPGTEMPAQYLLPAKAIVNLNDGADVQIGDILARIPQEGSVNKDITG
GLPRVADLFEARKPKESAVLAEVSGTVTFGKETKGKRRIVITPLDGSDPVEIMIQKWRNL
NVFEGETVEKGEVISDGPSNAHDILRILGVAELAKYIVSEIQEVYRLQGVAINDKHIEVI
VRQMLRKAEINETGDSDFIPGDQVEYAAIIDQNKRLDAEGKIPAKYERVLLGITKASLAT
ESFISAASFQETTRVLTEGAVTGKRDFLRGLKENVVVGRLIPAGTGLAYHSERKRKRQMA
TEGMTVSAEDVQQALTEALNASMSSPDAE
NT seq
4230 nt
NT seq
+upstream
nt +downstream
nt
atgaaagatttgctgaatctgctgaagtcccagggacagtccgaagagttcgactccatt
cgtgtgtccttggcatcaccggatatgatccgttcctggtcttacggtgaagtcaaaaag
ccggaaaccatcaactaccgtaccttcaagccggaacgtgatggcctgttctgtgccaag
atttttggtccggtcaaggattacgagtgcctgtgcggcaagtacaagcgcatgaagcac
cgtggtgtcatctgcgagaagtgtggtgtcgaagtcactcaaaccaaggtgcgtcgtgag
cgcatggctcatattgagcttgcatcacccgttgcacatatctggttcctgaagtcactg
ccgtctcgtatcggcctgatgctggacatgaccctgcgtgatatcgagcgtgtactctac
ttcgaatctttcgtagtgatcgatccgggtatgaccacgcttgagcgcggtcagatgatg
aacgacgagcagtactttgaagcactggaagagttcggtgacgatttcgatgcccgtatg
ggtgcggaagcgattaaagaactgctggcttcaatcgatctggaagaagagtgccaacag
ctgcgtgaagagctgccgcagaccaactctgaaaccaagatcaagaagctgtccaagcgt
ctcaaactgatggaagccttcctgaagtcgggcaatgatcccggctggatgatcatggaa
gtgctgccggtattgccgccggatctgcgtccgctggtaccgctggatggtggtcgtttc
gcgacctccgacctgaacgatctgtaccgtcgtgtgatcaaccgtaacaaccgtctgaag
cgcctgctcgacctgaacgcgccggatatcatcgtgcgcaacgagaagcgcatgctgcag
gaatccgttgacgcgttgctggacaacggtcgtcgcggtcgtgccataaccggttccaac
aagcgcccgctgaaatccttggccgatatgatcaagggcaagcagggtcgtttccgtcag
aacctgctcggcaagcgtgttgactactccggtcgttccgtaatcgtggtaggcccgtac
ctgcgtctgcatcagtgcggtctgccgaagaaaatggcactggagctgttcaagccgttc
atcttctccaagctggagctgcgtggccatgcgaccaccatcaaggcggccaagaagatg
gttgagcgtgaagagccgctggtgtgggatatcctcgacgaggttatccgcgaacatccg
gtcctgctgaaccgtgcaccgacactgcaccgtctgggtattcaggcgttcgaaccggtt
ctgatcgaaggcaaagcgattcagctgcacccactggtgtgtgccgcgtacaacgctgac
tttgacggtgaccagatggcggtgcacgtaccgctgaccatcgaagcccagcttgaagcc
cgtgccctgatgatgtccaccaacaacatcctgtcaccggcgaacggcgagccgatcatt
gtaccgtctcaggacgtggtactgggcctgtattacatgacccgtgagcgtatcaacgcc
aagggtgagggcatgatcttctctgacatcaaggaagtgcagcgcgcccacggtgccggt
caggttcatcttcaggcacgtatcaaggtacgtattccggaagtgatccgtgacatcgaa
ggcaatgtggaagagcgtcacgaactgcaggacaccactgtgggccgtgccatgctgttc
gatatcgtgcctgatggccttccgttcgaactggtcgaccaggcgatgaagaagaagtcg
atctcgcgcctgctcaacgaagcctaccgtcgctgtggtctgaaggacaccgttatcttc
gccgaccagctgatgtacatgggcttccgtcaggcgaccatgtccggcgcgtccatcggc
gtgaacgactttgaaatcccggccgagaaggtcgagatcattgccgaggccgataaagaa
gttaaagagatcgagcgtcagttcgctgatggtctcgtaactcagggcgaaaaatacaac
aaggttatcgacatctggtctcgtgccaacgaactgctggccaagaagatgatggataac
ctgaaagtcgacgttgtcatcgatgccgaaggcaacaaggtcgagcaggagtccttcaac
tccgtttatatgatggccgactctggtgctcgaggcagtgccgcacagattcgtcagctg
tccggtatgcgtggcttgatggccaagccagatggttccatcatcgaaacaccgatcgtg
gctaacttccgtgaaggtctgaacgtacttcagtacttcatctcaacccacggtgcgcgt
aagggtcttgcggatacagctctgaaaaccgcaaactctggttatctgactcgacgtctg
gttgacgtggcacaggatgttgtaatcaccgagccagactgtggtaccgacaagggtgta
ctggtacagccgatgatcgagggtggcgatgtgatcgtgactctgggtgagcgtgtactg
gggcgtgtcgtggctcaggatgtgcttgacccgagcggcaaggaaacactgatcgaagcc
ggcacgctgattgacgaaacctgggtttatcgtctggaaaatgacgagaaatacagcggt
attgacgaaattctggtgcgctccgcgatcacctgtgaagctcaggttggcatctgttcc
aactgctatggtcgtgacttgggtcgtggacatctggttaaccgaggcgaagcggtcggt
gttattgccgcccagtccatcggtgaaccgggtacacagttgaccatgcgtaccttccac
atcggtggtgctgcatcgcgagccgctgctgtggataacattcaggtcaagaacggtggt
gaaatccgcctgcataacctgaagtatgttgagcgtaccgatggaaacctggtggcgacc
tctcgttccggtgaagtcggtgtaaccgatgagcatggtcgtgagcgtgagcgttacaag
ctgccgtacggtgccatcatcaaggtgcgtgacggctccaaggttgatgccggtgctgtt
gtggccaactgggacccgcacacccatccgatcgtgaccgaagtggcgggccgcatccag
tacgtgggtatggaagatggtatcaccatcaaacgtcagaccgacgaactgacaggcctc
tcaaccattgagattctggatggcaaggatcgtccgcaggctggcaaagacattcgtccg
atggtcaaactggtagacgagcagggcaacgacgtgttccacccgggcactgaaatgccg
gcccagtacctgttgccggccaaggcgatcgtcaacctgaacgacggtgctgatgttcag
atcggtgacattcttgcgcgtattccgcaggaaggttcggtcaacaaggacatcaccggt
ggtctgccgcgtgttgccgacctgttcgaggcacgtaagccgaaagagtctgccgtactg
gcagaggtttcaggtaccgtaaccttcggcaaggaaaccaagggcaagcgtcgcatcgtg
atcaccccgctggatggttctgatccggttgagatcatgatccagaagtggcgtaacctg
aacgtgtttgagggtgaaacggttgagaagggtgaggtcatctctgatggtccgtccaac
gctcacgacatcctgcgaatcctgggtgtagccgaactggccaagtacattgtcagcgag
atccaggaggtttatcgcctccagggtgtggcaatcaacgacaagcacattgaagtaatt
gtgcgtcagatgctgcgcaaggccgagattaatgaaaccggcgattccgacttcatcccg
ggtgaccaggttgagtatgccgcgatcattgatcagaacaagcgccttgatgcggaaggc
aaaattccggccaagtacgagcgcgtactgctgggtattaccaaagcctctctggcaaca
gagtcgttcatctccgcggcctccttccaggagacaacccgcgtattgaccgaaggtgcg
gtaaccggcaagcgcgacttcctgcgcggcctgaaagaaaacgtggtggtaggtcgactg
atcccggcgggtacgggtctggcataccacagcgagcgtaagcgtaaacgtcagatggca
acagaaggtatgaccgtgagtgcggaagatgtgcagcaggcactgaccgaagcactcaat
gcatccatgtcttcgccggacgctgagtaa
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