Mucilaginibacter ginkgonis: GO620_003455
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Entry
GO620_003455 CDS
T07235
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mgik
Mucilaginibacter ginkgonis
Pathway
mgik03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mgik00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
GO620_003455 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgik03400
]
GO620_003455 (ligD)
Enzymes [BR:
mgik01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
GO620_003455 (ligD)
DNA repair and recombination proteins [BR:
mgik03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
GO620_003455 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
Ripply
Motif
Other DBs
NCBI-ProteinID:
QQL50525
UniProt:
A0A6I4I194
LinkDB
All DBs
Position
complement(762227..764950)
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AA seq
907 aa
AA seq
DB search
MEKLKEYNKKRDFNKTAEPKAGKSKDKDHLIFVVQKHDASRLHYDFRLEMDGVLKSWAVP
KGPSLDPKIKHLAMMVEDHPFDYLNFEGIIPKGEYGGGTVIVWDEGTYEPIEPIKGKKAQ
EKHLLKQLAAGSLKIKLHGEKLNGEFALVKTHGMGENGWLMIKHKDDYATSKDITKADRS
VLSGKTIDEMAKTSEKVWQNGHEEDVVPDEALAEEMDDDAQEPNETDETDVKALFKKAPK
SKMPANIKPMKATLVDEPFDEPGWVFEVKWDGYRATALLDKKNGVQLISRNNLPFEKYYP
INEGLQEWKMDAVLDGELLVLNDKGVSDFGAMQNWRSEADGNLVYYIFDILWYEGKNLMG
LSLSDRQAILKSILPTDNEHIRQSTVFKANGKDFFAAAEKMGLEGIIAKKADSTYTSDLR
SKEWLKIKVQRRQEVVIAGFTKNEGTAKAFSALLLGVYKGKELVFAGKVGTGFSDKLQKE
MMGQFKPLITDKSPFDVEIDVDKPSRFRPQRLGAKPTWLKPELVCEVAFAEVTSDGVFRQ
ASFKGMRTDKEAKDVVLETPVDAEATVAETEEKPVKRSAEKNKKADLKLAPIKNTDRKTL
LNPTEDTQVKKVCGHELKFNHVTKLYWPEDKITKGQMLNYYYKVGEYMISYLKDRPMSLN
RFPGGIHGQSFYQKNVSDKAPDWAKTFAHDTDEGKHSKYLVGTDEASLLWMASLGCIEIN
PWFSRVQSPDNPDYCVIDLDPDKHTYDQVVEAARIVKDILDAIDVPSYPKTSGSTGMHIY
IPLEAKYTYKESQLFANIIVKLVHKQIPDYTSIERSIAARGGKMYLDFLQNRPGATIAGP
YSLRPKPGATVSMPLAWDEVKKGLTIKHFNINNAIDRLKETGDLFHGVLGKGIDLRKTIE
KSQSVFG
NT seq
2724 nt
NT seq
+upstream
nt +downstream
nt
atggaaaagctaaaagagtacaataagaaaagggattttaataaaactgcagagccaaaa
gccggcaaaagcaaggacaaagatcatttgatctttgttgtgcaaaagcatgatgcgtcg
cgcctgcattacgatttcaggctggaaatggacggcgttctaaaaagctgggctgtgccg
aaagggccatccctcgacccaaagatcaaacacctggccatgatggtcgaagaccatccg
tttgactacctcaattttgaaggcatcattcctaaaggcgagtatggcggtggaacggtc
attgtatgggatgagggcacatatgagcctatcgagccaatcaagggtaaaaaggcgcag
gaaaaacacttgttaaagcagttagcagcaggatcgttaaaaataaaattacacggcgaa
aaattgaatggtgagttcgccctggttaaaactcatggcatgggcgagaacggatggctg
atgatcaaacataaagacgactacgcaaccagcaaagatatcaccaaggcagaccggtct
gttttaagcggaaagaccatagacgaaatggccaaaaccagtgagaaagtttggcaaaac
gggcacgaggaagatgtggtgcccgatgaagcattagcagaagaaatggatgatgacgca
caggaaccgaacgaaactgatgaaacagatgtgaaagcgttgtttaaaaaagcgccaaaa
tctaaaatgcctgccaacattaagcccatgaaggccacccttgtggacgaaccgtttgat
gagccgggatgggtgtttgaggtgaaatgggacggttaccgggcaacggctttgctggat
aagaagaacggcgtgcaactaatttcacgtaacaatctgcctttcgaaaaatattatcct
attaatgagggtctgcaggagtggaagatggatgccgtgctcgacggcgaattgctggta
ttgaatgacaagggcgtatcagactttggcgccatgcaaaactggcgaagcgaagccgat
ggtaatttggtctactacatctttgatatactatggtatgagggtaaaaacctgatgggt
ttatcattgtctgatcgacaggcgatcttaaaatccatattaccaacagataacgaacac
attcgccaaagcaccgtatttaaggcaaacggcaaagacttttttgcggctgccgagaaa
atggggctcgaaggtatcattgcaaaaaaggccgacagcacttacacctccgatctgcgt
tcgaaagaatggctgaagataaaagttcagcgcaggcaagaagtggtgatagccggcttc
accaaaaacgagggcactgctaaagctttcagcgcgttgctgcttggggtctataaaggc
aaagagttggtatttgcaggcaaagttggtaccggcttctctgacaagctacaaaaagag
atgatgggacagtttaagccgctcattacagacaagagtccgttcgatgtagaaattgac
gtagacaagccgtcgcgattcaggccgcagcgacttggtgctaaacctacctggttaaaa
cccgaattggtttgcgaggtcgcctttgccgaagtcactagcgacggcgtattcaggcaa
gcatcattcaagggtatgcgtaccgataaggaagcgaaggatgttgttcttgaaactcct
gttgatgcagaagctaccgttgcggaaactgaagaaaaacccgttaagaggtcggctgaa
aagaataaaaaagccgacttgaaactggcgccaataaaaaatacagaccgcaaaacactg
ctcaaccctaccgaagatacccaagtaaaaaaagtgtgcggacacgagcttaaatttaac
catgtaaccaaactctactggcccgaagacaagatcaccaagggccagatgcttaattat
tactacaaggttggcgaatacatgatctcctatttaaaagacaggccgatgtcgcttaac
cgttttccgggcggtattcatggccaaagcttttaccagaaaaatgtgtctgataaagca
ccagactgggccaaaacattcgctcacgataccgacgaaggtaaacattctaaatacctg
gtgggtactgatgaggccagcctgctttggatggcgtctttaggatgtatcgagatcaat
ccgtggtttagccgggtgcaatcgcctgacaacccagattattgcgtgatagaccttgac
cctgataagcatacttatgaccaggttgtagaagccgcacgtattgtaaaagacatttta
gatgctatagacgtaccatcataccctaaaacttcgggctctacaggtatgcacatttat
atcccgcttgaggcaaagtacacctacaaagaatcgcagctgttcgccaacatcattgta
aaactggtgcacaaacaaatacctgactataccagcatagaacgaagtattgcggcgcgt
ggtggcaaaatgtacctcgactttttacaaaaccgccccggagcaaccattgccggtccc
tactcgctgcgaccaaaacccggcgcgacagtttccatgccgctggcctgggacgaggtt
aaaaaaggtttaacaataaagcacttcaatatcaataacgctattgaccgcctcaaagaa
acaggtgatctgtttcacggtgtattaggaaaaggcatcgatctgaggaaaactatcgaa
aaatcgcagagtgtgtttggctaa
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