KEGG   Mucilaginibacter ginkgonis: GO620_003455
Entry
GO620_003455      CDS       T07235                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mgik  Mucilaginibacter ginkgonis
Pathway
mgik03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mgik00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    GO620_003455 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mgik03400]
    GO620_003455 (ligD)
Enzymes [BR:mgik01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     GO620_003455 (ligD)
DNA repair and recombination proteins [BR:mgik03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     GO620_003455 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DNA_primase_S Ripply
Other DBs
NCBI-ProteinID: QQL50525
UniProt: A0A6I4I194
LinkDB
Position
complement(762227..764950)
AA seq 907 aa
MEKLKEYNKKRDFNKTAEPKAGKSKDKDHLIFVVQKHDASRLHYDFRLEMDGVLKSWAVP
KGPSLDPKIKHLAMMVEDHPFDYLNFEGIIPKGEYGGGTVIVWDEGTYEPIEPIKGKKAQ
EKHLLKQLAAGSLKIKLHGEKLNGEFALVKTHGMGENGWLMIKHKDDYATSKDITKADRS
VLSGKTIDEMAKTSEKVWQNGHEEDVVPDEALAEEMDDDAQEPNETDETDVKALFKKAPK
SKMPANIKPMKATLVDEPFDEPGWVFEVKWDGYRATALLDKKNGVQLISRNNLPFEKYYP
INEGLQEWKMDAVLDGELLVLNDKGVSDFGAMQNWRSEADGNLVYYIFDILWYEGKNLMG
LSLSDRQAILKSILPTDNEHIRQSTVFKANGKDFFAAAEKMGLEGIIAKKADSTYTSDLR
SKEWLKIKVQRRQEVVIAGFTKNEGTAKAFSALLLGVYKGKELVFAGKVGTGFSDKLQKE
MMGQFKPLITDKSPFDVEIDVDKPSRFRPQRLGAKPTWLKPELVCEVAFAEVTSDGVFRQ
ASFKGMRTDKEAKDVVLETPVDAEATVAETEEKPVKRSAEKNKKADLKLAPIKNTDRKTL
LNPTEDTQVKKVCGHELKFNHVTKLYWPEDKITKGQMLNYYYKVGEYMISYLKDRPMSLN
RFPGGIHGQSFYQKNVSDKAPDWAKTFAHDTDEGKHSKYLVGTDEASLLWMASLGCIEIN
PWFSRVQSPDNPDYCVIDLDPDKHTYDQVVEAARIVKDILDAIDVPSYPKTSGSTGMHIY
IPLEAKYTYKESQLFANIIVKLVHKQIPDYTSIERSIAARGGKMYLDFLQNRPGATIAGP
YSLRPKPGATVSMPLAWDEVKKGLTIKHFNINNAIDRLKETGDLFHGVLGKGIDLRKTIE
KSQSVFG
NT seq 2724 nt   +upstreamnt  +downstreamnt
atggaaaagctaaaagagtacaataagaaaagggattttaataaaactgcagagccaaaa
gccggcaaaagcaaggacaaagatcatttgatctttgttgtgcaaaagcatgatgcgtcg
cgcctgcattacgatttcaggctggaaatggacggcgttctaaaaagctgggctgtgccg
aaagggccatccctcgacccaaagatcaaacacctggccatgatggtcgaagaccatccg
tttgactacctcaattttgaaggcatcattcctaaaggcgagtatggcggtggaacggtc
attgtatgggatgagggcacatatgagcctatcgagccaatcaagggtaaaaaggcgcag
gaaaaacacttgttaaagcagttagcagcaggatcgttaaaaataaaattacacggcgaa
aaattgaatggtgagttcgccctggttaaaactcatggcatgggcgagaacggatggctg
atgatcaaacataaagacgactacgcaaccagcaaagatatcaccaaggcagaccggtct
gttttaagcggaaagaccatagacgaaatggccaaaaccagtgagaaagtttggcaaaac
gggcacgaggaagatgtggtgcccgatgaagcattagcagaagaaatggatgatgacgca
caggaaccgaacgaaactgatgaaacagatgtgaaagcgttgtttaaaaaagcgccaaaa
tctaaaatgcctgccaacattaagcccatgaaggccacccttgtggacgaaccgtttgat
gagccgggatgggtgtttgaggtgaaatgggacggttaccgggcaacggctttgctggat
aagaagaacggcgtgcaactaatttcacgtaacaatctgcctttcgaaaaatattatcct
attaatgagggtctgcaggagtggaagatggatgccgtgctcgacggcgaattgctggta
ttgaatgacaagggcgtatcagactttggcgccatgcaaaactggcgaagcgaagccgat
ggtaatttggtctactacatctttgatatactatggtatgagggtaaaaacctgatgggt
ttatcattgtctgatcgacaggcgatcttaaaatccatattaccaacagataacgaacac
attcgccaaagcaccgtatttaaggcaaacggcaaagacttttttgcggctgccgagaaa
atggggctcgaaggtatcattgcaaaaaaggccgacagcacttacacctccgatctgcgt
tcgaaagaatggctgaagataaaagttcagcgcaggcaagaagtggtgatagccggcttc
accaaaaacgagggcactgctaaagctttcagcgcgttgctgcttggggtctataaaggc
aaagagttggtatttgcaggcaaagttggtaccggcttctctgacaagctacaaaaagag
atgatgggacagtttaagccgctcattacagacaagagtccgttcgatgtagaaattgac
gtagacaagccgtcgcgattcaggccgcagcgacttggtgctaaacctacctggttaaaa
cccgaattggtttgcgaggtcgcctttgccgaagtcactagcgacggcgtattcaggcaa
gcatcattcaagggtatgcgtaccgataaggaagcgaaggatgttgttcttgaaactcct
gttgatgcagaagctaccgttgcggaaactgaagaaaaacccgttaagaggtcggctgaa
aagaataaaaaagccgacttgaaactggcgccaataaaaaatacagaccgcaaaacactg
ctcaaccctaccgaagatacccaagtaaaaaaagtgtgcggacacgagcttaaatttaac
catgtaaccaaactctactggcccgaagacaagatcaccaagggccagatgcttaattat
tactacaaggttggcgaatacatgatctcctatttaaaagacaggccgatgtcgcttaac
cgttttccgggcggtattcatggccaaagcttttaccagaaaaatgtgtctgataaagca
ccagactgggccaaaacattcgctcacgataccgacgaaggtaaacattctaaatacctg
gtgggtactgatgaggccagcctgctttggatggcgtctttaggatgtatcgagatcaat
ccgtggtttagccgggtgcaatcgcctgacaacccagattattgcgtgatagaccttgac
cctgataagcatacttatgaccaggttgtagaagccgcacgtattgtaaaagacatttta
gatgctatagacgtaccatcataccctaaaacttcgggctctacaggtatgcacatttat
atcccgcttgaggcaaagtacacctacaaagaatcgcagctgttcgccaacatcattgta
aaactggtgcacaaacaaatacctgactataccagcatagaacgaagtattgcggcgcgt
ggtggcaaaatgtacctcgactttttacaaaaccgccccggagcaaccattgccggtccc
tactcgctgcgaccaaaacccggcgcgacagtttccatgccgctggcctgggacgaggtt
aaaaaaggtttaacaataaagcacttcaatatcaataacgctattgaccgcctcaaagaa
acaggtgatctgtttcacggtgtattaggaaaaggcatcgatctgaggaaaactatcgaa
aaatcgcagagtgtgtttggctaa

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