Mucilaginibacter ginsenosidivorans: FRZ54_06270
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Entry
FRZ54_06270 CDS
T06123
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mgin
Mucilaginibacter ginsenosidivorans
Pathway
mgin03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mgin00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FRZ54_06270 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgin03400
]
FRZ54_06270 (ligD)
Enzymes [BR:
mgin01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FRZ54_06270 (ligD)
DNA repair and recombination proteins [BR:
mgin03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FRZ54_06270 (ligD)
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_C
DNA_ligase_A_M
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QEC62206
UniProt:
A0A5B8UUU5
LinkDB
All DBs
Position
complement(1376306..1378807)
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AA seq
833 aa
AA seq
DB search
MSLVEYVKKRVFSKTPEPKSGKAKGKTLNFVVQRHHASHLHYDFRLELNGTLKSWAVPKG
PSMNPADKRLAMMVEDHPIDYQHFEGIIPNGNYGAGVVIIWDKGTYTSLADDREADVKTL
RAGLKSGNLKFKLNGEKLKGEFALVKLHGAEDNSWLLIKHNDEFAVHKDYSSEDLVPDEI
KKMLNNKSGKATKLPRVKKPAAEKKSPELSDGAEDKPRSEKAYTPMMAKLESKVFDNADW
IYEKKLDGYRALGYTGKGAKLISRNGIDFSHKYQAILDELKVIEESAILDGELVIEDKKG
QSKFQHIQNYEGDTDGLTIKYYVFDLLKLNGHDLRGLELIKRKGLLKTLILSLKSKRIIY
NDHIEGKGSDLFKKAQKEGWEGIIGKDAYSYYNSGTRTDRWLKFKLQNSQEAIICGFTAP
TGSRKHFGALVLGINDGSHVRYIGNCGTGFNDVSIKELYGKMHPLETDKKPFDEKVHQRT
KVTWIKPKLVCEVWYAEWTADGHLRQPVYKGLRMDKEKEKVVMETPDTQLADEEIIKLGK
AKLKLTHLNKVFWKDEGITKGDLIHYYRDMAGWIVPYLKDKPISMRRQPNGISDPGFFQK
DTDSAHMPSWIKTEPLYSESNDKHINYIIGKDEATLLYLANIGCIEINPWLSSYKKPENP
DFVVIDIDPHDVPFTEPVAVALKTKEIFDRMKLDVFIKTSGSKGLHIYCYVGAKYDYDFT
KMFAEYVAGMVHDELPDITSIERSPAKRPNRTYVDFLQNRRGQTIACPYSVRPKPGATVS
APLHWHEVNDDLKLSNFTIHNMRERVKKVDDPWKNLTKTKADLKKGLELLKAE
NT seq
2502 nt
NT seq
+upstream
nt +downstream
nt
atgagtttagtggagtacgtaaagaagcgggttttctcgaaaacgccggagccgaaaagc
ggcaaggcaaaaggcaaaacgctcaattttgtggtgcagcggcaccatgcctcgcatttg
cattacgatttccgcctcgaactgaatggcacgctgaaaagctgggcggttcccaaaggg
ccatccatgaaccccgccgacaagcgccttgccatgatggtggaggaccacccgattgac
taccagcattttgaaggcatcatccccaatggcaactatggtgccggcgtggtgataata
tgggacaaagggacttacacttcactggcagatgaccgggaagcggatgtaaaaactttg
cgggccgggcttaagtcgggtaacctcaaattcaaactgaatggggaaaaactgaaaggt
gaatttgcgttggtgaaactgcacggggcggaagataactcgtggctgctcattaagcac
aacgatgagtttgccgttcacaaggattattcgagcgaggaccttgtgcccgatgagata
aaaaagatgctgaacaacaaaagcggcaaggcaacaaaattgccgcgggtgaaaaagccg
gcagcagaaaaaaaaagtcctgagctaagcgacggggctgaagataagccccgaagcgaa
aaagcatatacgcctatgatggcgaagctggaatcaaaagtttttgataatgccgactgg
atatatgaaaagaaactggacggctaccgggccctcggttacaccggcaagggcgccaaa
ttaatatcccgtaatggcatcgacttcagccataaataccaggctatattagacgaactg
aaggtaatagaagaaagtgccatactggatggcgaactggtaatagaggacaaaaaaggg
caaagcaagtttcagcatatacagaattatgaaggcgatacggatggattaaccattaaa
tattatgttttcgatctgttgaagctgaacgggcacgacctgcggggactggaactgatc
aaacgcaaaggcttactcaagacacttatattatctctgaaaagcaaacgcattatttat
aacgatcatatcgagggcaaaggatcagacctgttcaaaaaagcgcagaaagagggatgg
gaaggtattattggcaaggatgcttacagctattacaacagcggcacacggacggaccgc
tggttaaaatttaagctccaaaattcgcaggaggctattatatgcggattcactgctccc
accggctcgcgcaaacattttggggcgctggtgctgggtattaacgacggcagccacgtc
aggtatatcggcaattgcggtaccggttttaatgatgtttcgatcaaagagctttacggc
aagatgcatccgctggaaactgacaaaaaaccttttgacgaaaaagtacatcaacgcaca
aaagtcacctggataaagccgaaattagtctgtgaggtttggtatgccgaatggaccgcc
gacgggcatttgcgccagccggtttataaaggcctgcgtatggataaggaaaaagaaaaa
gtagttatggaaacaccggacacacaactggcagatgaggagatcattaagctgggcaag
gcgaagctgaaactgactcacctgaacaaggttttctggaaagacgaaggtataaccaaa
ggtgatctgatccattattaccgggatatggccggatggatagtgccctaccttaaggat
aaacccatcagcatgcgccgccagcctaatggcatatccgatcccggtttttttcagaag
gatacggattccgcccatatgccatcatggataaaaactgagcccctgtattctgaaagt
aacgataaacacatcaattatatcattggcaaggacgaggcaacattactttacttggct
aatatcggttgtatcgagatcaatccatggctcagttcctacaaaaagccggagaatccg
gattttgtggtgatcgatatagacccgcatgatgtgccctttaccgagcccgttgcggtg
gcgctaaaaaccaaagaaattttcgacaggatgaagcttgatgttttcatcaaaacctcg
ggctccaaagggctgcacatttactgctatgtgggcgctaagtatgattacgatttcacc
aaaatgttcgcagaatacgtagccggtatggtacatgatgagttgcctgatattacgagt
attgagcgcagtccggcaaaacgcccaaatcgcacttatgtcgactttttgcagaaccgg
cgcgggcaaaccattgcctgcccttattccgtgcgaccaaagcccggggccacggtatcg
gcgccattgcactggcacgaggtgaacgacgacctgaaactatccaacttcaccattcac
aatatgcgcgaaagggtaaaaaaggtggacgatccctggaaaaacctcaccaaaaccaaa
gccgatctgaaaaagggtcttgagctattgaaggcggaataa
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