Mucilaginibacter ginsenosidivorax: FSB76_28040
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Entry
FSB76_28040 CDS
T06204
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mgk
Mucilaginibacter ginsenosidivorax
Pathway
mgk03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mgk00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FSB76_28040 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgk03400
]
FSB76_28040 (ligD)
Enzymes [BR:
mgk01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FSB76_28040 (ligD)
DNA repair and recombination proteins [BR:
mgk03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FSB76_28040 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
RNA_ligase
DNA_primase_S
Motif
Other DBs
NCBI-ProteinID:
QEC79617
UniProt:
A0A5B8W835
LinkDB
All DBs
Position
complement(6780654..6783368)
Genome browser
AA seq
904 aa
AA seq
DB search
MSLETYAQKRDFTKTAEPKAGKSKDKNSLVFVIQKHNASRLHYDFRLEMSGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYRNFEGIIPEGEYGGGTVIVWDEGTYEPIEKIKGKKEQE
KHLLKELESGSVKIKLHGEKLEGEFALVKTRGMGDNAWLLIKHDDDFASKKDITKEDKSV
ISGKTIETMEKTSDKVWHSGHEEKIGKPKKSSSKEKSTKPAEPDESVAEPEDINVPMVLK
KAPKAKIPTGIKPMLATLVDEPFDGPDWVYEVKWDGYRALAFVNKGEVELLSRNNKTFNE
KFYPIYKILKGWKINAVFDGEILVLNDKGVSNFGNLQNWRSEADGELVYYVFDILWCDGK
NLMNLPLSQRQAILREVLPADNDNVRTSKVFNASGTEFFKAAERMGLEGIIAKKASSIYS
PDLRSKEWLKIKVHKRQEVVIAGFTKNADTAKQFSSLLLGVYENDSLQYVGKVGTGFSDK
VQKEMMAQFKPLITDKSPFDTIPDVNKPSRFRPNPPKAKATWLKPQLVCEVAFSEVTSDG
VFRHPSFQGMRVDKKATDVVREVAEPTETAIEQAEEKHEDNHASAIKPPKEKGRKTLLNP
TDETQVRKICGHDLKFTHLSKIYWPEDKVTKRDMFNYYYQVAEYILPYLKDRPMSLNRFP
GGIHGPSFYQKDVKGKAPDWVKTFPYTNGEGEHKEYLVGTDEASLLWMASLGCIEMNPWF
SRIQSPDNPDYCVIDLDPDKNTFDQVIAAALEVKKVLDAIDVPSYCKTSGSTGMHIYIPT
DAKYSYDQTQLFARIIVNIVHKQIPDYTSLERMVANRKGKMYLDFLQNRPGATIAGPYSL
RPKIGATVSMPLHWDEVKPGLTMKHFTIFNSVDRLKVEGDLFKGVLGKAIDLEKTMEKAK
SVFG
NT seq
2715 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaacatatgcccaaaagcgggattttaccaaaaccgccgaacccaaagcc
ggaaaaagcaaggacaaaaacagcctcgtttttgtaatccaaaagcacaatgcttcgcga
ctgcattatgatttcaggctggagatgagtggcgtgctcaaaagctgggcggtgcccaaa
ggcccgtcaacagatcctaaaaccaaacggctggccatgatggtagaagatcatccttat
gattaccgcaactttgaaggcatcatccccgaaggcgaatatggtggcggtacggttata
gtttgggacgaaggcacctatgaacccatcgaaaaaattaaaggcaagaaagagcaggaa
aagcacctgttgaaagagctcgaatccggatcggtaaaaataaagcttcatggcgaaaag
ctggaaggcgagtttgcccttgtaaaaacccgcggcatgggcgataatgcctggctgctt
ataaaacatgatgacgattttgcatcaaaaaaagatattaccaaagaagataaatccgta
atatcgggcaaaaccatcgaaacgatggaaaaaaccagcgataaggtttggcatagcggg
cacgaggaaaagataggaaagcccaaaaaatcatcgtcaaaagaaaaatccactaaacca
gccgaacctgatgaaagcgtggccgaacctgaagatattaacgtgcccatggtattaaaa
aaagcccccaaagccaaaatacccaccggcataaagcctatgctggccacattggttgat
gaaccttttgacggccccgattgggtttacgaggtaaaatgggatggctaccgtgcgctc
gcgttcgtaaacaagggagaggtggagctgttatcgcgcaataataaaacgtttaacgaa
aaattttaccccatctacaagattctaaaaggatggaaaattaatgctgtgtttgatggc
gagatattggtattaaacgacaagggcgtatctaactttggcaacctgcaaaactggcgc
agcgaggcggatggcgaactggtttattatgtgtttgacattttgtggtgcgatggaaaa
aacctgatgaatttaccactctcgcaacgccaggccatactaagggaggttttaccggca
gataacgacaacgtgcgcaccagcaaagtatttaatgccagcggcaccgaattttttaaa
gctgccgaaaggatgggattagaaggtatcatcgcaaaaaaagcaagcagcatttattcg
ccggatctacgatcgaaagagtggctcaagataaaagtacataaaaggcaggaagtagtg
atagcaggttttactaaaaatgccgatacagctaaacagtttagttcattgctgttaggc
gtttatgaaaacgacagtcttcagtatgtaggtaaagtgggcaccggcttttcggataaa
gtacaaaaggaaatgatggcacaatttaagcctttaataaccgataaaagcccttttgat
accatacccgatgtaaacaagccatcgcgtttcaggccaaacccgcccaaggccaaggca
acatggctaaagccccagctggtttgcgaggtagcttttagcgaagttaccagcgatggc
gtgtttcgtcacccatcattccagggcatgcgcgttgataaaaaggcaacggatgtagtg
cgtgaggttgcagagcctactgagacagcaattgaacaagcggaagaaaaacatgaagat
aaccatgcatcggccataaaaccaccaaaagagaaaggaagaaaaaccttgctaaaccca
accgacgaaacccaggtacgcaaaatttgcggccacgatttaaagtttacccacctgagc
aaaatttactggcccgaggataaggtaaccaagcgtgatatgtttaactactattaccag
gtggcggagtatattttaccgtacctgaaagatcgccccatgtcgcttaaccggtttccc
ggcggtattcacgggccaagcttttaccaaaaggatgtaaaaggtaaagcgcccgattgg
gtaaaaacttttccgtataccaacggcgagggcgagcacaaagaatatttggttggcacc
gatgaggcaagcctgctatggatggcctcgttaggctgcatcgagatgaatccctggttc
agtcgtatccaatcgccggataaccctgattattgtgtaattgaccttgaccccgacaaa
aacaccttcgaccaggtgatcgctgcagcgctggaagtaaaaaaagtgttggatgccatt
gatgtgccctcctactgcaaaacttccggctcaaccgggatgcacatttatattcctact
gatgccaaatacagctacgatcaaacccaattattcgcccgcatcattgtaaacatcgtt
cataaacaaatacccgattataccagcctggaacgtatggttgccaaccgtaaaggtaaa
atgtatcttgattttttgcaaaatcgccccggcgcaaccattgccggcccctactcactc
cgccccaaaattggagcaaccgtatctatgcccctccactgggacgaggtaaaacccggc
ctcaccatgaagcattttaccatttttaattcggttgacagacttaaggttgaaggtgac
ctgtttaaaggtgtattaggaaaggctattgatttggagaaaacaatggaaaaagctaaa
tcagttttcggttag
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