KEGG   Mucilaginibacter ginsenosidivorax: FSB76_28040
Entry
FSB76_28040       CDS       T06204                                 
Symbol
ligD
Name
(GenBank) DNA ligase D
  KO
K01971  bifunctional non-homologous end joining protein LigD [EC:6.5.1.1]
Organism
mgk  Mucilaginibacter ginsenosidivorax
Pathway
mgk03450  Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:mgk00001]
 09120 Genetic Information Processing
  09124 Replication and repair
   03450 Non-homologous end-joining
    FSB76_28040 (ligD)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03400 DNA repair and recombination proteins [BR:mgk03400]
    FSB76_28040 (ligD)
Enzymes [BR:mgk01000]
 6. Ligases
  6.5  Forming phosphoric-ester bonds
   6.5.1  Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
    6.5.1.1  DNA ligase (ATP)
     FSB76_28040 (ligD)
DNA repair and recombination proteins [BR:mgk03400]
 Prokaryotic type
  DSBR (double strand breaks repair)
   NHEJ (non-homologous end-joining)
    Two-component NHEJ DNA repair complex
     FSB76_28040 (ligD)
SSDB
Motif
Pfam: LigD_Prim-Pol LigD_N DNA_ligase_A_M DNA_ligase_A_C mRNA_cap_enzyme RNA_ligase DNA_primase_S
Other DBs
NCBI-ProteinID: QEC79617
UniProt: A0A5B8W835
LinkDB
Position
complement(6780654..6783368)
AA seq 904 aa
MSLETYAQKRDFTKTAEPKAGKSKDKNSLVFVIQKHNASRLHYDFRLEMSGVLKSWAVPK
GPSTDPKTKRLAMMVEDHPYDYRNFEGIIPEGEYGGGTVIVWDEGTYEPIEKIKGKKEQE
KHLLKELESGSVKIKLHGEKLEGEFALVKTRGMGDNAWLLIKHDDDFASKKDITKEDKSV
ISGKTIETMEKTSDKVWHSGHEEKIGKPKKSSSKEKSTKPAEPDESVAEPEDINVPMVLK
KAPKAKIPTGIKPMLATLVDEPFDGPDWVYEVKWDGYRALAFVNKGEVELLSRNNKTFNE
KFYPIYKILKGWKINAVFDGEILVLNDKGVSNFGNLQNWRSEADGELVYYVFDILWCDGK
NLMNLPLSQRQAILREVLPADNDNVRTSKVFNASGTEFFKAAERMGLEGIIAKKASSIYS
PDLRSKEWLKIKVHKRQEVVIAGFTKNADTAKQFSSLLLGVYENDSLQYVGKVGTGFSDK
VQKEMMAQFKPLITDKSPFDTIPDVNKPSRFRPNPPKAKATWLKPQLVCEVAFSEVTSDG
VFRHPSFQGMRVDKKATDVVREVAEPTETAIEQAEEKHEDNHASAIKPPKEKGRKTLLNP
TDETQVRKICGHDLKFTHLSKIYWPEDKVTKRDMFNYYYQVAEYILPYLKDRPMSLNRFP
GGIHGPSFYQKDVKGKAPDWVKTFPYTNGEGEHKEYLVGTDEASLLWMASLGCIEMNPWF
SRIQSPDNPDYCVIDLDPDKNTFDQVIAAALEVKKVLDAIDVPSYCKTSGSTGMHIYIPT
DAKYSYDQTQLFARIIVNIVHKQIPDYTSLERMVANRKGKMYLDFLQNRPGATIAGPYSL
RPKIGATVSMPLHWDEVKPGLTMKHFTIFNSVDRLKVEGDLFKGVLGKAIDLEKTMEKAK
SVFG
NT seq 2715 nt   +upstreamnt  +downstreamnt
atgagcctggaaacatatgcccaaaagcgggattttaccaaaaccgccgaacccaaagcc
ggaaaaagcaaggacaaaaacagcctcgtttttgtaatccaaaagcacaatgcttcgcga
ctgcattatgatttcaggctggagatgagtggcgtgctcaaaagctgggcggtgcccaaa
ggcccgtcaacagatcctaaaaccaaacggctggccatgatggtagaagatcatccttat
gattaccgcaactttgaaggcatcatccccgaaggcgaatatggtggcggtacggttata
gtttgggacgaaggcacctatgaacccatcgaaaaaattaaaggcaagaaagagcaggaa
aagcacctgttgaaagagctcgaatccggatcggtaaaaataaagcttcatggcgaaaag
ctggaaggcgagtttgcccttgtaaaaacccgcggcatgggcgataatgcctggctgctt
ataaaacatgatgacgattttgcatcaaaaaaagatattaccaaagaagataaatccgta
atatcgggcaaaaccatcgaaacgatggaaaaaaccagcgataaggtttggcatagcggg
cacgaggaaaagataggaaagcccaaaaaatcatcgtcaaaagaaaaatccactaaacca
gccgaacctgatgaaagcgtggccgaacctgaagatattaacgtgcccatggtattaaaa
aaagcccccaaagccaaaatacccaccggcataaagcctatgctggccacattggttgat
gaaccttttgacggccccgattgggtttacgaggtaaaatgggatggctaccgtgcgctc
gcgttcgtaaacaagggagaggtggagctgttatcgcgcaataataaaacgtttaacgaa
aaattttaccccatctacaagattctaaaaggatggaaaattaatgctgtgtttgatggc
gagatattggtattaaacgacaagggcgtatctaactttggcaacctgcaaaactggcgc
agcgaggcggatggcgaactggtttattatgtgtttgacattttgtggtgcgatggaaaa
aacctgatgaatttaccactctcgcaacgccaggccatactaagggaggttttaccggca
gataacgacaacgtgcgcaccagcaaagtatttaatgccagcggcaccgaattttttaaa
gctgccgaaaggatgggattagaaggtatcatcgcaaaaaaagcaagcagcatttattcg
ccggatctacgatcgaaagagtggctcaagataaaagtacataaaaggcaggaagtagtg
atagcaggttttactaaaaatgccgatacagctaaacagtttagttcattgctgttaggc
gtttatgaaaacgacagtcttcagtatgtaggtaaagtgggcaccggcttttcggataaa
gtacaaaaggaaatgatggcacaatttaagcctttaataaccgataaaagcccttttgat
accatacccgatgtaaacaagccatcgcgtttcaggccaaacccgcccaaggccaaggca
acatggctaaagccccagctggtttgcgaggtagcttttagcgaagttaccagcgatggc
gtgtttcgtcacccatcattccagggcatgcgcgttgataaaaaggcaacggatgtagtg
cgtgaggttgcagagcctactgagacagcaattgaacaagcggaagaaaaacatgaagat
aaccatgcatcggccataaaaccaccaaaagagaaaggaagaaaaaccttgctaaaccca
accgacgaaacccaggtacgcaaaatttgcggccacgatttaaagtttacccacctgagc
aaaatttactggcccgaggataaggtaaccaagcgtgatatgtttaactactattaccag
gtggcggagtatattttaccgtacctgaaagatcgccccatgtcgcttaaccggtttccc
ggcggtattcacgggccaagcttttaccaaaaggatgtaaaaggtaaagcgcccgattgg
gtaaaaacttttccgtataccaacggcgagggcgagcacaaagaatatttggttggcacc
gatgaggcaagcctgctatggatggcctcgttaggctgcatcgagatgaatccctggttc
agtcgtatccaatcgccggataaccctgattattgtgtaattgaccttgaccccgacaaa
aacaccttcgaccaggtgatcgctgcagcgctggaagtaaaaaaagtgttggatgccatt
gatgtgccctcctactgcaaaacttccggctcaaccgggatgcacatttatattcctact
gatgccaaatacagctacgatcaaacccaattattcgcccgcatcattgtaaacatcgtt
cataaacaaatacccgattataccagcctggaacgtatggttgccaaccgtaaaggtaaa
atgtatcttgattttttgcaaaatcgccccggcgcaaccattgccggcccctactcactc
cgccccaaaattggagcaaccgtatctatgcccctccactgggacgaggtaaaacccggc
ctcaccatgaagcattttaccatttttaattcggttgacagacttaaggttgaaggtgac
ctgtttaaaggtgtattaggaaaggctattgatttggagaaaacaatggaaaaagctaaa
tcagttttcggttag

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