Magnetococcus marinus: Mmc1_1651
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Entry
Mmc1_1651 CDS
T00427
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgm
Magnetococcus marinus
Pathway
mgm03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgm00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
Mmc1_1651
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgm03400
]
Mmc1_1651
Enzymes [BR:
mgm01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Mmc1_1651
DNA repair and recombination proteins [BR:
mgm03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
Mmc1_1651
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
DEAD
UvrB_inter
Helicase_C
CarD_TRCF_RID
ResIII
MFD_D3
UB2H
AAA_22
ERCC3_RAD25_C
RecG_dom3_C
Motif
Other DBs
NCBI-ProteinID:
ABK44160
UniProt:
A0L867
LinkDB
All DBs
Position
complement(2049751..2053347)
Genome browser
AA seq
1198 aa
AA seq
DB search
MTDPITIQKLLDKLDGRKSPLILPELTTGASSWLAVELALTQPAPVVLVTGKVQRAESIA
RELLFFGAQRGVHILPFPAWETLPFEPLSPYGPLVGDRLATLSRLIGLGKSGPISIGNEL
GDSRTVVITTPAAIMQRLMPKAVLARYGFAFSVGDQLNLPQFRELLTRSGYNPVSQVSEP
GEYAARGGLIDLFPPGRDEPVRVELFGDEVESIRLFDPSNQRSLDPIPAVEVLPVREVIL
NADTISCFRTAYREVFGGYAAEDLIYKEISQNRTYQGMEQYLPLFYPDLDTLFDYLPKQT
LFLMEPDVPNQIEERAREIEDQHRIAYQAGQGNEKGYDGSSMRCIARNTLYLDQRELTER
LKPYPQLLQSATGKPALDLDLHPIPPIQEGVQGADHSQQDEKKATATVMDRLCRQISLWQ
KEQRRIGFVSRTIGQRERMRELLTDHKVSVVDGSSWSALLQADPRQPMLLLGDVSDGFEH
PTRHVVLISEDNVFGVRIRRRQISRRYLDQLIASFADLNEGDAVVHVDHGVGRFGGLVSL
EVGQLKNDFLLIIYADGDKLYVPVENLDRVGKHSSGEEVQLDKLGGKRWAKTRAKARKKI
LEMAEELVAIQAQREATQGVVYSGPDALYQEFASTFPFEETVDQAKAIEAVLEDMASPKA
MDRLVCGDVGFGKTEVALRATFRAAMDGKQVAILVPTTILAQQHYENFAKRLAGYPIKVD
ILSRFRTPKEQKATIEAVGHGTIDVIVGTHRLLQTDVKFKDLGLLVVDEEQRFGVSHKER
IKNLRATLDILTLTATPIPRTLNMAMAGVRDISIIASPPADRLAIRTIITHYDKQQVREA
ILRELYRGGQVFYVHNQVQDIERKAQEIAELVPEARVGVAHGQMRENQLEKVMMEFYRQT
FNILVCTTIVENGVDIPTANTIIIDRADKFGLAQLHQLRGRVGRSKHRAYAYMLVPHLRR
LTKHAEKRLEALESLGELGAGFMLATHDLEIRGAGNILGDEQSGQIKEVGFELYNQMLRE
AVVALQTARAQGRDLASTTPLGQAPVDEGPAPVVPSINLHLSTYIPEEYVEDVHQRLTLY
KRIAELKTYEELQEMRLELADRFGPLPATVDHLLSVMEIKRLCVKLRIIKLDAGPKGGTF
QFDELFTVEIPRLIAMVQREVGHARLDQTSRTLILRNRPWSEDKQRLQEVREALTTLI
NT seq
3597 nt
NT seq
+upstream
nt +downstream
nt
gtgaccgatcccatcaccatacaaaaattgctggataagcttgacgggcgcaagagcccg
ctcattttacctgaactgaccactggggcttccagttggttggcggtggagttggccttg
acgcaaccggctccggtggtgctggttacgggcaaagttcagcgggcggaatccatcgct
cgtgaacttctttttttcggtgcccagcgcggggtccatatcctcccttttcccgcctgg
gagacgctcccttttgagcccctctccccttacggccccctcgtgggggatcgcttagcc
accctttcacgcttgattgggttgggcaagtcgggtcccatttccattggtaatgagctg
ggggatagtcgcacggtggtgatcaccaccccagcggccatcatgcaacggttgatgcca
aaagcggtattggcccgttatggttttgccttttcggtgggggatcagcttaatttaccg
caatttcgtgagctattgacccgctcggggtacaacccggtttcgcaggtgtcggagcct
ggggagtatgcggcgcgtgggggattgattgacctcttcccccccggtcgggatgagccg
gtacgggtcgagttgtttggcgatgaggtcgagagtatccgcctgtttgatccaagcaat
cagcgctctttagaccccatacctgcggtagaggtactcccggtgcgggaggttattctt
aatgccgacacgataagctgttttcgcactgcttatcgtgaggtatttgggggctatgcg
gcggaggatttgatctacaaagagatttctcaaaaccgtacttatcagggtatggagcag
tatctaccgctcttttatcctgatctggacaccctctttgattatctccccaagcagacg
ctgtttttgatggaacccgatgtacccaaccagattgaagagcgtgcgcgggagattgag
gatcaacaccgtatcgcctatcaggcgggccaaggcaatgaaaagggctatgatggcagt
agcatgcgctgcattgcccgcaacaccctttatttagatcaaagagagctgacggaacgc
cttaaaccctacccgcaactcttacaaagcgccacgggcaaaccggctctggacctggat
ctacaccccatcccccccattcaggagggggtgcagggtgccgaccatagccaacaggat
gagaaaaaagccaccgccacggtcatggatcgcctctgtcgtcagatcagcttatggcaa
aaggagcagcgccgcatcggttttgtttctcgcaccatcggccagcgggagcgcatgcgg
gagctgctgaccgaccataaggtgagcgtggtggatggctccagttggtccgcgttgctg
caagcggaccccagacagcccatgctgctgctgggggatgtaagtgatggttttgaacat
cccacccgccatgtggtgctgattagtgaagacaatgtttttggggtacgcatacgccgc
cgtcagataagccgtcgttatttggatcagttaatcgccagctttgccgaccttaatgaa
ggcgatgctgtggtccatgtggatcatggggtgggtcgttttggggggctggtatcgctg
gaggttggtcagcttaagaatgattttttgctgattatctatgccgacggcgacaagctg
tatgtccctgtcgagaacctggaccgggttggtaagcactcttcgggtgaagaggtgcag
ctggacaaactggggggcaaacgttgggccaagacccgcgccaaggcgcgtaagaagatt
ttggagatggctgaagagctggtggccattcaagcccagcgggaggccacccaaggggtg
gtttattcggggccggatgccctttatcaggagtttgccagcaccttcccgtttgaagag
acggtggaccaggccaaagccattgaggcggtgttggaagatatggcctcacccaaagcg
atggatcggctggtgtgtggtgatgtaggctttggcaaaaccgaggttgcgctacgggcg
accttccgcgcagcgatggatggcaaacaggtggcgattttggtgcctaccaccattttg
gcccagcagcactatgaaaattttgccaagcggctggcgggctaccctattaaggtggac
attctctcgcggtttcgcacaccaaaagagcaaaaggccaccatagaagcggttggccat
ggcacgattgatgtcattgtgggcactcataggctgctgcaaacggatgttaaatttaag
gatcttggtctgctggtggtggatgaggagcaacgctttggggtgagccataaggagcgc
attaaaaatcttcgcgctactttggatattttgacccttaccgctacgcccattccccgc
accttgaacatggccatggcgggggtgcgcgatattagtattattgcctctcccccagcg
gaccggttggccattcgcaccattattacccactacgataagcagcaggtgcgtgaagcg
attttgcgggagctctatcgggggggacaggttttttatgttcacaatcaggtgcaggat
attgagcgcaaagcacaagagattgcggaactggtaccagaggcccgggtgggtgtagcc
catggtcaaatgcgggaaaaccagttagagaaggtgatgatggagttttaccgtcaaact
ttcaacattctggtatgtaccaccattgtggaaaacggcgtggatattcccaccgctaat
accatcattattgatcgtgccgacaaatttggtctggctcaactacaccaactgcgggga
cgggtgggacgcagcaagcatcgcgcttacgcctatatgttggtgccccatttacggcgc
ttaaccaagcatgccgaaaaacgcttggaggcgctggagagcctgggtgagctgggggca
ggctttatgctggcgacccatgatttagagatccggggtgcgggtaacattttgggcgat
gaacaatctgggcagatcaaagaggttggttttgagttgtacaatcagatgctgcgggag
gcggtggtggccctgcaaacggcccgggcccaaggtcgggatttggcctctaccacccct
ctggggcaggctccagtggatgaaggtcccgcaccggtggtacccagcatcaacctgcat
ctttccacctatattcccgaggagtatgtggaggatgtgcatcagcgtttaaccctctac
aagcgcattgctgaactcaaaacctatgaggagttgcaggagatgcggctggagttggcg
gaccgttttggtcccctgcccgcaacggtggaccatttgctttcggtgatggagatcaaa
cgtctctgcgttaaactgcgcattatcaaactggatgcaggccctaagggtgggactttc
caatttgatgaactttttacggtggagataccccgtcttattgccatggtacagcgggag
gttggtcatgcccgactggatcagaccagtcgcaccttaattcttagaaatcgcccatgg
agcgaagacaagcagcgcctgcaagaggtccgcgaggcgttgaccaccctcatttag
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