Mycobacterium gordonae: H0P51_22820
Help
Entry
H0P51_22820 CDS
T06936
Symbol
mfd
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
mgor
Mycobacterium gordonae
Pathway
mgor03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
mgor00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
H0P51_22820 (mfd)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgor03400
]
H0P51_22820 (mfd)
Enzymes [BR:
mgor01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
H0P51_22820 (mfd)
DNA repair and recombination proteins [BR:
mgor03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
H0P51_22820 (mfd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
AAA_22
RecG_dom3_C
UB2H
Motif
Other DBs
NCBI-ProteinID:
QLL06536
UniProt:
A0A7D6I5Y3
LinkDB
All DBs
Position
complement(5116334..5119972)
Genome browser
AA seq
1212 aa
AA seq
DB search
MTAPGAASPDTPIAGLVELALTAPTFQQLIERASDRPIELPLVGPASARLFVASALAELG
PLLVVTATGREADDLTAELRGVFGDAVAVFPSWETLPHERLSPGIDTVGSRMMLLRRLAH
PDDARLGPPLRVVVTAVRSLLQPMAPQLGWQEPLTLTVGDEIPFEDVAQRLVELAYTRVD
MVGRRGEFAVRGGILDIFAPTAEHPVRVEFWGDEITEMRMFSVADQRSIPEIEVRTLIAV
ACRELLLTPDVKERAGILAKEHPATENTVTGSIIDMLAKLAEGIPVDGMEALLPVLRPDD
HALLTDQLADGTPVLVCDPEKVRTRAADLIKTGREFLEASWSVAALGTDAPVDVEQLGGS
GFAELDEVRAAAVSADHPWWTLSQLSDESAVELDIRSAPSARGHQHDIDGIFAMLRAHVA
TGGYAAMVAPGTGTAHRMVERLAESDIAASMLESGVTPKPGVVGVLKGPLHEGVVIEGAN
LVVITEADLTGSRATAVEGKRLAAKRRNTVDPLALNAGDLVVHDQHGIGRFVEMVERTVG
GARREYLVLEYASAKRGGGSDKLYVPMDSLDQLSRYVGGHAPALSRLGGSDWTNTKTKAR
KAVREIAGELVALYAKRQASPGHAFAPDTPWQAEMEDAFGFTETVDQLTAITEVKSDMEK
PIPMDRVICGDVGYGKTEIAVRAAFKAVQDGKQVAVLVPTTLLADQHLQTFTDRMAGFPV
TVKGLSRFTDPAESRAVIDGLADGSVDVVIGTHRLLQTGVRWKDLGLVVVDEEQRFGVEH
KEHIKALRSHVDVLTMSATPIPRTLEMSLAGIREMSTILTPPEERYPVLTYVGPHDDKQI
AAALRRELLRDGQAFFVHNRVSSIDSAAARLRELVPEARVVVAHGQMPEELLERTVQGFW
NREYDILVCTTIIETGLDISNANTLIVERADTFGLSQLHQLRGRVGRSRERGYAYFLYPP
NAPLTETAYDRLATIAQNNELGAGMAVALKDLEIRGAGNVLGVEQSGHVAGVGFDLYVRL
VGEAVEAYKAAADGQTVTTAEEPKDVRIDLPVDAHLPPDYIASDRLRLEAYRRLASAQDD
AAVESVVEELKDRYGPLPEPAERLVAVARLRLLCRASGITEVSAVSAATVRLSPLTLPDS
AQVRLARMYPGGRYRPTTSTVQVPIPRAGGIGAGHIRDVELVQMVADLVTALAGKPQRDV
GPSGPASKERQG
NT seq
3639 nt
NT seq
+upstream
nt +downstream
nt
atgaccgcaccgggggctgctagcccagacaccccgatcgcggggctcgtcgaattggcg
ctgaccgcaccgacattccaacagctcatcgagcgtgcctccgatcgccctattgaactg
ccgctggttggcccggccagcgcgcgccttttcgttgccagcgcactggccgagcttgga
ccgctgctggtagtcaccgccaccggccgggaagccgacgacctgaccgcggagttgcgt
ggggtgttcggtgacgcggtggccgtcttcccgtcctgggagacgctgccgcatgaacgg
ctctcgcccggcatcgacacggtcggcagccggatgatgctgctgcgacggctggctcac
cccgatgacgcgcggctgggtccgccgttgcgggtggtggtgaccgccgtccgatcgctg
ctgcaaccgatggcgccgcagctgggttggcaggaaccgctgacgctgaccgttggcgac
gagatcccgttcgaggacgtcgcccagcggctggtcgagttggcctacacccgggtggac
atggtgggccgccgcggtgaattcgccgtacgcggcggaatcttggatatcttcgcgcct
accgccgagcacccggtgcgcgtcgagttctggggtgacgagatcaccgagatgcggatg
ttctcggtcgccgaccagcgctcgattcccgagatcgaagtccggacgctgatcgcggtg
gcctgccgggaactgctgctcactcccgatgtgaaagagcgtgcgggcatattggccaag
gaacatccggccaccgagaacactgtcaccggcagcatcatcgacatgctggccaagctg
gctgagggcatcccggtggacggcatggaagcgctattgccggtattgcggccggacgac
cacgcgctgctcaccgatcagcttgccgacggcaccccggtgctggtgtgtgacccggag
aaagtgcgcacccgcgcggccgacctgatcaagaccggtcgggagttcctggaggcgtcg
tggtcggtggcggctctggggacggacgcgcccgtcgacgtcgaacagctcggtggctcc
gggttcgccgagctggatgaggtccgggccgccgccgtcagcgcggaccatccgtggtgg
acgctgagccagttgtccgacgagtcggctgtggagctagacatccggtcggcgccctcg
gcgcgcgggcaccagcacgacatcgacggtattttcgccatgctgcgtgcacacgtcgcg
accggcggttacgcggcgatggtcgcgcccggcaccggaaccgcccaccgcatggtggag
cgactggccgaatccgacatcgccgcaagcatgctggagtcgggcgtcacccccaaaccc
ggggtggtcggcgtgctcaagggtccgctgcacgaaggtgttgtcattgagggcgccaac
ctggtcgtcatcaccgaggccgatctcaccggcagccgggccacggctgtggagggcaag
cggctggccgccaaacggcgaaacaccgtcgacccgctggcgctgaacgccggcgacctg
gtggtgcacgaccagcacggcatcggccgattcgtcgagatggtggaacgtaccgtcggc
ggcgcacggcgcgaatacctggttttggagtacgcatccgccaagcggggcggcggatca
gacaagctgtacgtgccaatggactcgctggatcaattgtcgcgctacgtcggcggccac
gctccggcgttgagcaggctgggcggcagcgactggaccaacaccaaaaccaaagcgcgc
aaagccgtgcgcgagatcgccggcgaactggtcgcgctgtacgccaagcggcaagctagc
cccgggcacgcgttcgccccggacacgccctggcaggccgagatggaggacgcgttcggt
tttaccgaaactgtcgaccagctcaccgcgatcaccgaggtcaagtcggatatggagaag
ccgatcccgatggaccgggtgatctgcggcgacgtcggctacggcaagaccgagatcgcg
gtgcgggcggcgttcaaggcggtgcaggacggcaagcaggtcgcggtgctggtgcccacc
actctgctggccgaccagcatctgcagaccttcaccgaccggatggccggattcccggtg
accgtgaaaggtctctcccggttcaccgatccggccgagtcccgcgcggtaatcgacggc
ctggccgacggctcggtggacgtggtgatcgggacgcaccggctgctgcagaccggggtc
cgctggaaggatctcggactggtcgtggtcgacgaggagcagcggttcggcgtcgagcac
aaggagcacatcaaggcgttgcgcagccacgtcgacgtgctgaccatgagcgctaccccg
atcccgcgcacgctggagatgagcctggccgggatacgcgagatgtcgacgatcctgacc
ccgcccgaggagcgctacccggtgctgacctacgtcggcccgcacgacgacaagcagatc
gcggccgcgctgcggcgcgagctgctgcgcgacgggcaggcgttcttcgtgcacaaccgg
gtcagctccatcgactccgccgccgcccggctgcgcgagctggtgcccgaggctcgggtg
gtagtcgcgcacgggcaaatgccggaggaactgctggaacgcaccgtgcagggcttctgg
aaccgggagtacgacatcctggtatgcaccacgatcatcgagaccggcctggacatctcc
aacgccaacacgctgattgtcgagcgcgccgacaccttcggcctatcgcagctgcaccag
ctgcgcggccgggtcggtcgcagtcgggaacgcggctacgcctacttcctgtatccgccg
aacgcgccgctgaccgagaccgcttacgaccgattggcgacgatcgcgcagaacaacgag
ctgggtgcgggcatggccgtagcgctgaaggacttggagatccgcggcgccggcaatgtg
ctgggggtcgagcagtccgggcatgtcgccggcgtgggcttcgacctgtatgtgcggttg
gtcggcgaggcggtggaggcgtacaaggctgcggccgatggacagactgtcaccacggcg
gaggagcccaaggacgtgcggattgacctgccggtcgatgcgcacctgccaccggactac
atcgccagtgaccggctccggctggaggcctatcggcggctggcctcagctcaggacgac
gccgccgtcgagtcggtggtggaggagctcaaagaccggtatgggccgttgccggaaccc
gccgaacggctggtcgcggtcgcccggctccggttgctttgccgggcgtccggaatcacc
gaggtcagcgccgtgtcggcggcgacggtgcggctctcgccgctgaccctgccggattcc
gcgcaggtgcgtctggcgcggatgtacccgggtgggcggtaccgccccaccacgtctacg
gtgcaggttccgattccgcgggcgggcggtattggcgcaggacacatccgtgatgtcgaa
ttggtccagatggtggctgacttggtaaccgcgttggcgggcaaaccgcagcgagatgtc
ggcccctcgggcccggcgagtaaggagcgacaaggctga
DBGET
integrated database retrieval system
