Mucilaginibacter gossypii: DIU38_013720
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Entry
DIU38_013720 CDS
T06453
Symbol
ligD
Name
(GenBank) DNA ligase D
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mgos
Mucilaginibacter gossypii
Pathway
mgos03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mgos00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
DIU38_013720 (ligD)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgos03400
]
DIU38_013720 (ligD)
Enzymes [BR:
mgos01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
DIU38_013720 (ligD)
DNA repair and recombination proteins [BR:
mgos03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
DIU38_013720 (ligD)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
mRNA_cap_enzyme
Motif
Other DBs
NCBI-ProteinID:
QEM17087
LinkDB
All DBs
Position
complement(3227288..3230014)
Genome browser
AA seq
908 aa
AA seq
DB search
MSLEKYAEKRDFSKTREPKAGRSKDKDHLMFVIQKHDASRLHYDFRLEMDGVLKSWAIPK
GPSTDPKVKRLAMMVEDHPFDYRNFEGLIPKGEYGGGTVIVWDEGTYEPIEEIKGKKAQE
KHLLKQLEAGSVKIKLHGEKLEGEYALVKTHGMGENGWLLIKHNDQFASGKDITKKDKSI
LSGKTIESMEKTSEKVWQHGHEEDVEKPEKTGKKKVPSEPVEQLEKKVDTNDTEDFDVEQ
LLKKAPESKAPTNIKPMKATLVDEPFDEPDWLYEVKWDGYRAIAMIDKKGAELISRNNLP
FDKYYPINKLLKDWQINAVIDGEILVLNDKGVSDFGALQNWRSEADGNLVYYVFDILWYE
GKNLMGLPLKQRQAILSAVLPTNDERIRQSKVFDTGGIEFFNAAERIGLEGIIAKKASSV
YTSDLRSKEWLKIKVQRRQEVIIAGFTKNAGTSKSFSALVLALYDDKGKLQYAGKVGTGF
SDKLQKEMMEQFKPLITDKSPFEVEPDVDKPSRFRPQRLGAKPTWLKPELVCEVAFAEVT
GDGVFRQASFKGMRSDKKTKDVVLETPKHTAETVEEAEGADNDTHAKAIKPVKNTDRKTL
LNPKDETQVRKICGHELKFTHLSKVYWPEDGVTKRDMFNYYYQVAEYILPYLKDRPMSLN
RFPNGIHGPSFYQKDVKGKAPDWITKTFPYTTSEGEHKEYLVGSDESYLLWMASLGCIEM
NPWFSRVQSPDNPDYCVVDLDPDKNTFDQVIAAALEVKKVLDAIDVPSYCKTSGSTGMHI
YIPLGAKYDYDQSQMFARLVVGIVHKQIPDYTSLERMVAKRNGKMYLDFLQNRPGATIAG
PYSLRPKPGATVSMPLHWDEVKPGLTMKDFTIFNSIDRLKETGDLFKGVLAKGIDLEKTI
KKAKSVFE
NT seq
2727 nt
NT seq
+upstream
nt +downstream
nt
atgagcctggaaaaatatgcggaaaaacgcgattttagcaaaacccgtgaacctaaagcg
gggaggagcaaggacaaagaccatctgatgtttgtgatccaaaagcatgatgcttcgcgt
ttacactatgatttcaggcttgaaatggatggcgtgctgaaaagctgggctatacccaaa
ggcccttcaaccgatcctaaagttaagcgccttgctatgatggttgaggatcatcctttt
gactaccggaattttgaaggcctcatccccaaaggtgaatatggcggcggtaccgttata
gtttgggatgagggtacttatgaacccattgaagagatcaaaggcaaaaaggcccaggaa
aaacacctgcttaaacaactcgaggccggctcggtgaagatcaagctccatggcgaaaag
ctggagggtgaatatgcccttgttaaaacccatggtatgggcgaaaacggctggctgctc
attaagcacaatgatcaatttgcgtcaggtaaagatattaccaaaaaagataaatctatt
ctttccggcaaaaccattgaaagtatggaaaaaaccagcgaaaaggtttggcagcacggg
catgaagaggatgtagaaaagcctgaaaaaacaggtaaaaaaaaagtcccgagcgaaccc
gttgaacaactggaaaagaaagtagacactaatgatacggaggattttgatgttgagcaa
cttctgaaaaaagcccctgaatcaaaagcgccaactaacataaagccaatgaaggccacc
cttgtagacgagccttttgatgagcccgattggctttacgaggttaaatgggatggctac
agggccattgccatgatcgacaagaaaggagcggagctgatctcccgcaataatcttcct
tttgataaatattatccaattaataaattgctgaaagactggcagatcaatgcagtaatt
gacggagagatcctggtattgaacgataaaggagtctccgattttggagcgctgcaaaac
tggcggagcgaggccgatggcaatttggtttattacgttttcgatatcctttggtacgag
ggcaaaaacctgatggggttaccacttaaacaacgccaggctatcttaagtgcggttctg
cccaccaatgatgagcgcatccgtcaaagcaaagtgtttgatacaggcgggatcgaattt
tttaacgccgccgaaaggattggactggaaggtattatcgctaaaaaagccagcagtgtt
tacacttccgatcttcgctcaaaagagtggcttaaaataaaagtgcagcgcaggcaggaa
gtgatcattgccggctttaccaaaaatgcgggcacttccaaatcgttcagcgcgctggtg
cttgctttatatgatgataagggcaaactacagtatgccggtaaagtgggtacaggcttt
tctgataaactgcagaaagaaatgatggaacagtttaagccgcttattaccgataaaagt
ccgtttgaggtggagcctgatgtggataagccatcaaggttcaggccgcagcgcttaggg
gctaagcccacctggcttaaaccagaattggtttgcgaggtggcatttgctgaggtaacc
ggcgatggggtgttcaggcaagcctcttttaaagggatgcgtagcgataaaaaaacaaaa
gatgttgtactggaaactccgaaacatacagccgaaacggttgaggaagccgaaggagct
gataatgatacacacgctaaagccattaaaccagtaaaaaatactgaccggaaaactctg
cttaatcctaaagatgaaacccaggtacgcaaaatttgcggacatgagcttaaattcaca
catctaagcaaagtttactggcccgaagatggtgtaaccaagcgggatatgttcaattac
tattaccaggtcgctgaatatatcttgccttatttaaaagacaggccaatgtcgcttaac
aggtttcctaatggcattcatgggccaagtttttaccaaaaggatgtgaaaggtaaagcc
cccgattggatcactaaaactttcccgtacaccaccagcgaaggggaacataaagaatat
ttagtaggttctgatgaatcttatttactatggatggcatcactgggatgtattgaaatg
aacccctggtttagccgggtacaatcgccggacaatcctgattactgcgtggtcgacctc
gatccggataaaaacacgttcgaccaggtgatcgcggctgctttggaggtaaaaaaagtg
cttgacgctatagatgtaccttcatactgtaaaacatcgggatcaacagggatgcatatt
tatatcccgttgggcgcgaagtatgattatgatcagtcacagatgtttgcgcggctcgtg
gtgggcattgttcataagcaaattcccgattatacaagtttggaacgtatggtagccaag
cgaaatggtaaaatgtaccttgattttctgcagaaccgtccgggagctacaatagcgggg
ccgtattccttgcgacctaaacctggtgctactgtttctatgcccctgcattgggacgaa
gtgaaacccgggctcaccatgaaagattttaccatttttaattccatcgaccgccttaaa
gaaaccggcgacctttttaaaggtgtactggcaaaaggcatcgacctggaaaaaactatt
aagaaggcgaagagtgtgtttgagtaa
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