Meleagris gallopavo (turkey): 100548164
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Entry
100548164 CDS
T01523
Symbol
UPF1
Name
(RefSeq) regulator of nonsense transcripts 1
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
mgp
Meleagris gallopavo (turkey)
Pathway
mgp03013
Nucleocytoplasmic transport
mgp03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
mgp00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
100548164 (UPF1)
03015 mRNA surveillance pathway
100548164 (UPF1)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
mgp03019
]
100548164 (UPF1)
Enzymes [BR:
mgp01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
100548164 (UPF1)
5.6.2.5 RNA 5'-3' helicase
100548164 (UPF1)
Messenger RNA biogenesis [BR:
mgp03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
100548164 (UPF1)
mRNA cycle factors
Common to processing body (P body) and stress granule
100548164 (UPF1)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
ATPase
nSTAND3
DEAD
Helicase_RecD
AAA_16
UvrD-helicase
SRP54
UvrD_C_2
AAA_22
Motif
Other DBs
NCBI-GeneID:
100548164
NCBI-ProteinID:
XP_019465513
Ensembl:
ENSMGAG00000004745
LinkDB
All DBs
Position
30:complement(3384057..3402965)
Genome browser
AA seq
1062 aa
AA seq
DB search
RAVPIVAIRSEERCRRGRISVNGPDGILQNGAVDDNVAKTSQLLAELNFEEDEEDTYYTK
DLPVHACSYCGIHDPACVVYCNTSKKWFCNGRGNTSGSHIVNHLVRAKCKEVTLHKDGPL
GETVLECYNCGCRNVFLLGFIPAKADSVVVLLCRQPCASQSSLKDINWDSSQWQPLIQDR
CFLSWLVKIPSEQEQLRARQITAQQINKLEELWKENPSATLEDLEKPGVDEEPQHVLLRY
EDAYQYQNIFGPLVKLEADYDKKLKESQTQDNITVRWDLGLNKKRIAYFTLPKTDSDMRL
MQGDEICLRYKGDLAPLWKGIGHVIKVPDNYGDEIAIELRSSVGAPVEVTHNFQVDFVWK
STSFDRMQSALKTFAVDETSVSGYIYHKLLGHEVEDVIIKCQLPKRFTAQGLPDLNHSQV
YAVKTVLQRPLSLIQGPPGTGKTVTSATIVYHLARQGNGPVLVCAPSNIAVDQLTEKIHQ
TGLKVVRLCAKSREAIDSPVSFLALHNQIRNMDSMPELQKLQQLKDETGELSSADEKRYR
ALKRTAERELLMNADVICCTCVGAGDPRLAKMQFRSILIDESTQATEPECMVPVVLGAKQ
LILVGDHCQLGPVVMCKKAAKAGLSQSLFERLVVLGIRPIRLQVQYRMHPALSAFPSNIF
YEGSLQNGVTAADRVKKGFDFQWPQPDKPMFFYVTQGQEEIASSGTSYLNRTEAANVEKI
TTKLLKAGAKPDQIGIITPYEGQRSYLVQYMQFSGSLHTKLYQEVEIASVDAFQGREKDF
IILSCVRANEHQGIGFLNDPRRLNVALTRARYGVIIVGNPKALSKQPLWNHLLNYYKEQK
VLVEGPLNNLRESLMQFSKPRKLVNTINPGARFMTTAMYDAREAIIPGSVYDRSSQGRPS
NMYFQTHDQIGMISAGPSHVTAMNIPIPFNLVMPPMPPPGYFGQANGPAAGRGAPKGKTG
RGGRQKNRFGIPGTSQSNLPNSQASQDVVSQPFSQGPLTQGYISMSQPSQMSQPGLSQPE
LSQDSYLGDEFKSQIDVALSQDSTYQGERAYQHGGVTGLSQY
NT seq
3189 nt
NT seq
+upstream
nt +downstream
nt
cgtgccgtcccgatagtcgcgatacggagcgaggagcgctgccggcgtgggaggatttcg
gttaatggacctgatggcattctgcagaacggagcagtggatgataacgtcgctaaaacc
agccagcttctggcagagttgaattttgaagaagatgaagaagatacttactatacaaag
gatcttcctgtgcatgcttgcagttactgtggtatccatgaccctgcctgtgtggtttac
tgcaacaccagcaaaaagtggttctgtaatgggcgtggaaatacatctggcagccacatt
gttaaccatctggtgagagcaaagtgcaaagaggtgactctccataaagatggacctcta
ggagagactgtcctggaatgttacaactgtggatgtcgtaatgtgtttctccttggcttt
attccagctaaggcagactctgtggttgttttgctgtgcaggcagccatgtgcaagtcag
agcagtttaaaggatattaattgggacagttcacagtggcagcctcttatccaagatcgc
tgcttcctttcgtggctggtaaagattccatctgagcaggagcagctgagagcacgtcag
attacagctcagcagattaacaaactggaagaactttggaaggaaaatccatctgcaacc
cttgaggacttagaaaagcctggtgttgatgaagagccacagcatgtcctgcttagatat
gaggatgcttatcaataccaaaatatatttggtcctctggtcaagcttgaggcagactat
gacaagaagcttaaggagtctcagacccaagataacatcacagtcagatgggacctgggc
ttgaataagaaaagaattgcttatttcactctgccaaagactgattcagatatgcgtctt
atgcaaggagatgagatctgcttgaggtataaaggagacctggcccctttgtggaaagga
attggccatgttatcaaagttcctgataattatggtgatgagattgccatcgagctgagg
agcagcgttggagcccccgtggaggttactcataacttccaagtggattttgtgtggaag
tctacttcgtttgacagaatgcagagtgctttaaaaacatttgctgtggatgagacttcg
gtgtcaggatacatctatcacaaactgttaggccatgaggtggaagatgtaattattaaa
tgccagttgccaaagcgttttacagcacaaggacttcctgatctcaaccattctcaggtt
tatgctgtgaagacagtcctgcagcgtcctctgagccttatccagggtccccctggtact
ggaaaaacagtgacatcagctaccattgtctatcacctggctagacagggcaatgggcct
gtgttagtgtgtgctccaagtaacattgctgtagatcagttgacagagaagatccatcag
actggtctgaaagtggttcggctgtgtgctaaaagccgtgaggcaattgactcacctgta
tctttcttggcactgcataaccagatcagaaacatggatagcatgccagagcttcagaag
ctgcaacaacttaaagatgaaactggagaactgtcatctgctgatgagaaacgctaccgt
gcgctgaagcgaacagcagagcgtgaattgctcatgaatgcagatgtgatctgctgcacc
tgcgtgggagctggcgatccaaggcttgcaaaaatgcagttccgttccatcctgattgat
gaaagcacccaggccactgagccagagtgcatggtgccagttgtgctgggagcaaagcag
cttattcttgtaggtgaccactgccagcttggtcctgttgtgatgtgtaagaaagctgcc
aaggcaggcctgtctcagtccctgtttgagaggctggtggtgctggggattcgccccatc
cgcctgcaggtgcagtaccgcatgcaccctgccctgagtgctttcccatccaacatcttc
tatgagggttcgctccagaatggtgtcactgcagctgaccgtgtgaagaaagggtttgat
ttccagtggccgcagccagataagccaatgtttttctatgttacacaaggacaggaagaa
attgccagctcaggcacctcttacttgaacagaacggaagctgccaacgtggagaagata
actacaaagcttttgaaagctggtgccaaacctgatcagattggcattattactccttat
gaaggccaacgatcctatctggtgcagtacatgcagttcagtggttccttgcatacaaaa
ctttaccaggaagtagaaattgcaagcgtggatgccttccaaggacgagagaaggacttt
attatcctgtcttgtgtgagggccaacgaacaccaagggataggatttctgaatgacccc
aggcgtcttaatgtggctcttacaagagcaaggtatggggtaattattgttgggaacccg
aaagctctgtctaaacaaccactttggaatcacctgctgaattactacaaggagcagaag
gttctggtggagggaccactgaataacctccgggagagcctcatgcaattcagcaagccc
cgaaaacttgtcaataccatcaacccaggcgcccgcttcatgaccactgccatgtatgat
gcacgtgaagctattattccaggatcagtctatgaccggagcagtcaagggcgcccatcc
aacatgtacttccaaacccacgaccagatcgggatgatcagtgcaggccccagccacgtc
actgctatgaacattcccatccccttcaacctcgtgatgcccccaatgccaccaccaggg
tatttcgggcaggccaacggcccggctgcaggacgtggggcacccaaagggaagaccggt
cgtggtgggcgccagaaaaatcgttttgggattcctggaacgagtcagtcaaaccttccc
aatagccaggcgagccaagatgtggtgtcccagcctttctcccagggtccactgactcag
gggtatatctccatgagtcagccatctcagatgagtcagcctgggctctcccaaccagaa
ttatcacaggacagttacctcggtgatgagtttaagtctcagattgacgtggcgctgtca
caggactccacctaccagggggaacgcgcgtatcaacatggcggagtgacgggactgtca
cagtactag
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integrated database retrieval system
