Mycolicibacterium grossiae: FZ046_00745
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Entry
FZ046_00745 CDS
T06593
Name
(GenBank) ATP-dependent DNA ligase
KO
K01971
bifunctional non-homologous end joining protein LigD [EC:
6.5.1.1
]
Organism
mgro
Mycolicibacterium grossiae
Pathway
mgro03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
mgro00001
]
09120 Genetic Information Processing
09124 Replication and repair
03450 Non-homologous end-joining
FZ046_00745
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
mgro03400
]
FZ046_00745
Enzymes [BR:
mgro01000
]
6. Ligases
6.5 Forming phosphoric-ester bonds
6.5.1 Ligases that form phosphoric-ester bonds (only sub-subclass identified to date)
6.5.1.1 DNA ligase (ATP)
FZ046_00745
DNA repair and recombination proteins [BR:
mgro03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
Two-component NHEJ DNA repair complex
FZ046_00745
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
LigD_Prim-Pol
LigD_N
DNA_ligase_A_M
DNA_ligase_A_C
DNA_primase_S
RNA_ligase
Thr_synth_N
DNA_ligase_OB_2
Motif
Other DBs
NCBI-ProteinID:
QEM43503
LinkDB
All DBs
Position
complement(145916..148198)
Genome browser
AA seq
760 aa
AA seq
DB search
MVDRCGRVKLTNPDKVLYPAAGTTKAEIFDYYVQIADVMVPHIAGRPVTRKRWPNGVGEP
DFFEKQLASSAPDWMARGSVTHRSGTTTYPLIDSREGLAWIAQQASLEVHVPQWRFVAQG
DRLDPGPATRIVFDLDPGEGVTFRQLCEVAHEVRSYVEDIGLTAYPLTSGSKGLHLYVPL
AEPVSSQGASVLAKRIAQQLEKSMPKRVTATMTKSLRAGKVFLDWSQNSAAKTTIAPYSL
RGRDQPTVAAPRTWEEIEDPGLRHLRFDEVLERVASHGDLLDGLDERVPLADKLTTYRTM
RDASKTPEPVPQKAPALGNDDTFVIQEHHARRLHYDFRLERGGVLVSWAIPKNLPDTPAV
NHLAVHTEDHPLEYATFAGTIPKGEYGGGEVFIWDTGTYEAEKFNDHPPDGPDKGGEVIV
TLTGSKVSGRYALIQTGGKNWLAHRMKEQHTLTEKDMAPMLATHGSVAKLTRAVWAFEGK
WDGYRLLVDADHGALQLRSRSGRDVTHEYPALRALAADLADHHVVLDGEVVALDEDGVPN
FGLMQNRARSTRIEFWAFDVLALDGRSLMRAKYSDRRRILEALADGGGLIVPEQLPGDGP
EAMAHARANRWEGVVAKRRDSTYQAGRRSSSWIKDKLWLTQEVVIGGWRAGEGGRSSGIG
ALLVGVPDPDGGGLQFAGRVGTGFTDKDLANLKKTLAPLHTDASPFTKRLTGPDAKGVTF
VRPELVGEVRYSERTSDGRLRQPSWRGLRDDKTPAEVVWE
NT seq
2283 nt
NT seq
+upstream
nt +downstream
nt
atggtggatcgctgcgggcgggtgaagctgaccaaccccgacaaggtgctgtatcccgcc
gcgggcaccaccaaggcggagatcttcgactactacgtgcagatcgccgacgtgatggtg
ccgcacatcgccggacggcccgtcacccgcaagcgctggcccaacggcgtcggcgagccc
gatttcttcgagaagcagctggcgtcgtcggcgccggactggatggcgcgcggctcggtg
acccaccgcagcggcaccaccacctaccccctgatcgacagccgggagggtctcgcctgg
atcgcgcagcaggcgtcgctcgaggtccacgtgccgcagtggcggttcgtcgcccagggt
gaccggctcgaccccgggcctgccacgcgcatcgtcttcgacctcgaccccggcgagggc
gtcaccttccgccagctctgcgaggtggcgcacgaggtgcgcagctacgtcgaggacatc
gggctgacggcgtaccccctgacgagcggcagcaagggcctgcacctgtacgtcccgctg
gccgagccggtgagttcccagggcgcctcggtgctggcgaagcgcatcgcccagcagctc
gagaagagcatgccgaagcgcgtcaccgcgacgatgaccaagagcctgcgcgccggcaag
gtcttcctcgactggagccaaaacagcgccgcgaagaccaccatcgcgccgtactcgctg
cgcgggcgcgatcagccgaccgtggcggcgccgcgcacctgggaggagatcgaagacccg
ggactgcgacacctgcgcttcgacgaggtgctcgagcgcgtcgcgagccacggcgacctg
ctcgacgggctcgacgagcgagtcccgttggcggacaagctgacgacgtaccgcacgatg
cgcgacgccagcaagacccccgagccggtaccgcagaaggcgcccgcgctcggcaacgac
gacacgttcgtcatccaggaacaccacgcacgccggttgcactacgacttccggctggag
cgcggaggcgtcctggtgtcgtgggccatcccgaagaacctgcccgacaccccggcggtc
aaccacttggccgtgcacaccgaggaccaccctctggagtacgcgaccttcgccggcacg
atccccaagggcgagtacggcggcggtgaggtcttcatctgggacaccggcacctacgag
gcggagaagttcaacgaccacccaccggacggtccggacaagggcggcgaggtgatcgtc
acgctcaccggctcgaaggtcagcggccgctacgcactgatccagaccggcggcaagaac
tggctggcgcaccggatgaaggagcagcacaccctcaccgagaaggacatggcgccgatg
ctcgccacgcacggctcggtggcgaagctgactcgtgcagtatgggcgttcgagggcaag
tgggacggctaccgtctgctcgtcgacgccgatcacggtgcgttgcaactgcgttcgcgc
agcggccgcgacgtcacgcacgagtatccggcgctgcgggccctggccgccgacctcgcc
gaccaccacgtggtgctcgatggggaggtggtcgcgctcgacgaggacggggtaccgaac
ttcgggctgatgcagaaccgcgcccggagcacgcgcatcgagttctgggcgttcgacgtg
ctggcgctcgacggccgatccctgatgcgcgccaagtactccgaccggaggcgcatcctc
gaggcgctcgccgacggcggcgggctgatcgtccccgagcagttgccgggcgacggtccg
gaggccatggcgcacgcacgggcgaaccggtgggagggcgtcgtcgccaagcgacgcgac
tcgacctaccaggcggggcggcggtcgtcgtcgtggatcaaggacaagctgtggctcacc
caggaggtcgtgatcggcggctggcgcgccggggaaggcggccgcagcagcggcatcggt
gcgttgctcgtcggcgttcccgaccccgacggcggcgggctgcagttcgcgggccgcgtg
ggcaccggcttcaccgacaaggacctggccaatctcaagaagaccctcgcaccgttgcac
accgacgcatcgccctttacgaagcggctcaccggccccgacgccaagggcgtgacgttc
gtccggcccgagctggtgggcgaggtccgctacagcgagcgcacctccgatggccgcctg
cgacaaccgagttggcgtgggctgcgcgacgacaagacgccggccgaggtggtctgggag
tag
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integrated database retrieval system
